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AATopo

Topological Descriptors for 20 Amino Acids calculated by Dragon

Bundled with BioMedR · exported, loads via data()

Class
data.frame
Dimensions
20 × 78
Missing
0
Format
rda · gzip
version 2 · 4.8 KB
File
data/AATopo.rda
Fingerprint
395c08e3
Source
Source not stated
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
ZM1
integer
13
0
16 – 76mean 38.7
Min.
16
1st Qu.
32
Median
36
Mean
38.7
3rd Qu.
42
Max.
76
Std. dev
13.6925
Skewness
0.8986
Kurtosis
0.7272
Outliers
31 low · 2 high
ZM1V
numeric
18
0
90 – 208mean 139.2
Min.
90
1st Qu.
109
Median
127
Mean
139.188
3rd Qu.
168
Max.
208
Std. dev
36.3917
Skewness
0.2773
Kurtosis
-1.457
ZM2
integer
14
0
14 – 88mean 40.15
Min.
14
1st Qu.
33
Median
37
Mean
40.15
3rd Qu.
42
Max.
88
Std. dev
16.4358
Skewness
1.148
Kurtosis
1.423
Outliers
41 low · 3 high
ZM2V
numeric
20
0
58 – 202mean 107.4
Min.
58
1st Qu.
80.75
Median
91
Mean
107.356
3rd Qu.
128.5
Max.
202
Std. dev
37.0325
Skewness
0.8281
Kurtosis
-0.1133
Outliers
10 low · 1 high
Qindex
integer
7
0
1 – 11mean 3.65
Min.
1
1st Qu.
2
Median
3
Mean
3.65
3rd Qu.
3.5
Max.
11
Std. dev
2.3232
Skewness
1.673
Kurtosis
2.487
Outliers
40 low · 4 high
SNar
numeric
13
0
1.792 – 10.345mean 4.719
Min.
1.792
1st Qu.
3.296
Median
4.133
Mean
4.7194
3rd Qu.
5.2445
Max.
10.345
Std. dev
2.0916
Skewness
0.9819
Kurtosis
0.4518
Outliers
10 low · 1 high
HNar
numeric
12
0
1.286 – 1.837mean 1.472
Min.
1.286
1st Qu.
1.355
Median
1.407
Mean
1.472
3rd Qu.
1.54
Max.
1.837
Std. dev
0.162
Skewness
0.8439
Kurtosis
-0.7096
Outliers
10 low · 1 high
GNar
numeric
13
0
1.431 – 1.993mean 1.632
Min.
1.431
1st Qu.
1.511
Median
1.5775
Mean
1.6323
3rd Qu.
1.7012
Max.
1.993
Std. dev
0.1595
Skewness
0.7998
Kurtosis
-0.6712
Outliers
10 low · 1 high
Xt
numeric
13
0
0.311 – 0.747mean 0.4918
Min.
0.311
1st Qu.
0.4382
Median
0.4925
Mean
0.4918
3rd Qu.
0.551
Max.
0.747
Std. dev
0.1065
Skewness
0.5211
Kurtosis
-0.1207
Outliers
10 low · 1 high
Dz
numeric
17
0
12.5 – 33mean 21.88
Min.
12.5
1st Qu.
18.5
Median
21.25
Mean
21.875
3rd Qu.
24.75
Max.
33
Std. dev
5.0858
Skewness
0.2523
Kurtosis
-0.5343
Ram
integer
5
0
1 – 5mean 2.75
Min.
1
1st Qu.
2
Median
3
Mean
2.75
3rd Qu.
3
Max.
5
Std. dev
0.8507
Skewness
0.4568
Kurtosis
0.7607
Outliers
10 low · 1 high
Pol
integer
10
0
2 – 20mean 8.9
Min.
2
1st Qu.
7.5
Median
8
Mean
8.9
3rd Qu.
10
Max.
20
Std. dev
3.8784
Skewness
0.9871
Kurtosis
1.404
Outliers
31 low · 2 high
LPRS
numeric
15
0
9.757 – 58.161mean 29.57
Min.
9.757
1st Qu.
22.0532
Median
27.36
Mean
29.5707
3rd Qu.
34.2893
Max.
58.161
Std. dev
12.0602
Skewness
0.5491
Kurtosis
-0.3171
Outliers
10 low · 1 high
VDA
numeric
15
0
7.2 – 49.2mean 23.91
Min.
7.2
1st Qu.
16.0625
Median
21.333
Mean
23.9097
3rd Qu.
28.95
Max.
49.2
Std. dev
11.2018
Skewness
0.5963
Kurtosis
-0.5705
Outliers
10 low · 1 high
MSD
numeric
15
0
0.275 – 0.436mean 0.3508
Min.
0.275
1st Qu.
0.3295
Median
0.349
Mean
0.3508
3rd Qu.
0.3708
Max.
0.436
Std. dev
0.0339
Skewness
0.1846
Kurtosis
0.5299
Outliers
10 low · 1 high
SMTI
integer
15
0
68 – 1576mean 480.4
Min.
68
1st Qu.
236
Median
348
Mean
480.35
3rd Qu.
559.5
Max.
1576
Std. dev
375.452
Skewness
1.356
Kurtosis
1.28
Outliers
20 low · 2 high
SMTIV
numeric
20
0
237 – 2923mean 1060
Min.
237
1st Qu.
552
Median
834.5
Mean
1060.29
3rd Qu.
1369.75
Max.
2923
Std. dev
706.172
Skewness
1.037
Kurtosis
0.2572
Outliers
10 low · 1 high
GMTI
integer
15
0
36 – 1507mean 389.2
Min.
36
1st Qu.
155
Median
248
Mean
389.2
3rd Qu.
448.25
Max.
1507
Std. dev
362.929
Skewness
1.581
Kurtosis
2.04
Outliers
20 low · 2 high
GMTIV
numeric
20
0
285 – 4946mean 1668
Min.
285
1st Qu.
749.75
Median
1193
Mean
1668.18
3rd Qu.
2443.25
Max.
4946
Std. dev
1288.95
Skewness
0.9554
Kurtosis
-0.0516
Xu
numeric
15
0
4.301 – 15.031mean 9.362
Min.
4.301
1st Qu.
7.698
Median
9.029
Mean
9.3616
3rd Qu.
10.705
Max.
15.031
Std. dev
2.7124
Skewness
0.1895
Kurtosis
-0.6503
SPI
numeric
15
0
2.804 – 8.542mean 5.929
Min.
2.804
1st Qu.
5.3155
Median
6.2985
Mean
5.9288
3rd Qu.
6.6665
Max.
8.542
Std. dev
1.4821
Skewness
-0.393
Kurtosis
-0.6268
Outliers
11 low · 0 high
W
integer
15
0
18 – 369mean 124.5
Min.
18
1st Qu.
64.25
Median
96
Mean
124.45
3rd Qu.
148.5
Max.
369
Std. dev
89.7526
Skewness
1.131
Kurtosis
0.5591
Outliers
10 low · 1 high
WA
numeric
15
0
1.8 – 3.742mean 2.724
Min.
1.8
1st Qu.
2.2942
Median
2.667
Mean
2.7243
3rd Qu.
3.061
Max.
3.742
Std. dev
0.5405
Skewness
0.1054
Kurtosis
-1.098
Har
numeric
15
0
5.222 – 25.639mean 12.92
Min.
5.222
1st Qu.
10.389
Median
11.924
Mean
12.9244
3rd Qu.
14.2425
Max.
25.639
Std. dev
4.7337
Skewness
0.8592
Kurtosis
0.5698
Outliers
20 low · 2 high
Har2
numeric
15
0
6.667 – 42.957mean 19.79
Min.
6.667
1st Qu.
15.167
Median
17.967
Mean
19.7921
3rd Qu.
22.0502
Max.
42.957
Std. dev
8.472
Skewness
0.9437
Kurtosis
0.6875
Outliers
20 low · 2 high
QW
numeric
15
0
18 – 297.862mean 116
Min.
18
1st Qu.
61.5
Median
96
Mean
116.035
3rd Qu.
144.25
Max.
297.862
Std. dev
75.4325
Skewness
0.8319
Kurtosis
-0.2303
Outliers
10 low · 1 high
TI1
numeric
12
0
-18.668 – 16.697mean -6.237
Min.
-18.668
1st Qu.
-9.9745
Median
-7.539
Mean
-6.2369
3rd Qu.
-2.6168
Max.
16.697
Std. dev
7.3985
Skewness
1.246
Kurtosis
2.219
Zeros
4
Outliers
10 low · 1 high
TI2
numeric
15
0
1.521 – 4.049mean 2.432
Min.
1.521
1st Qu.
1.8435
Median
2.428
Mean
2.4322
3rd Qu.
2.8515
Max.
4.049
Std. dev
0.6677
Skewness
0.4086
Kurtosis
-0.5155
STN
numeric
4
0
0 – 3.367mean 0.5084
Min.
0
1st Qu.
0
Median
0
Mean
0.5084
3rd Qu.
0.4022
Max.
3.367
Std. dev
0.967
Skewness
1.564
Kurtosis
1.354
Zeros
15
Outliers
50 low · 5 high
HyDp
integer
15
0
28 – 1018mean 304.9
Min.
28
1st Qu.
120
Median
206
Mean
304.95
3rd Qu.
375.25
Max.
1018
Std. dev
266.042
Skewness
1.205
Kurtosis
0.5002
Outliers
10 low · 1 high
RHyDp
numeric
15
0
5.667 – 29.827mean 14.7
Min.
5.667
1st Qu.
11.733
Median
13.533
Mean
14.6993
3rd Qu.
16.232
Max.
29.827
Std. dev
5.5925
Skewness
0.8836
Kurtosis
0.6279
Outliers
20 low · 2 high
w
integer
15
0
18 – 772mean 161.6
Min.
18
1st Qu.
65
Median
99
Mean
161.6
3rd Qu.
165.5
Max.
772
Std. dev
173.353
Skewness
2.229
Kurtosis
4.947
Outliers
30 low · 3 high
ww
integer
15
0
28 – 3738mean 527.5
Min.
28
1st Qu.
122
Median
220.5
Mean
527.45
3rd Qu.
460.25
Max.
3738
Std. dev
837.927
Skewness
2.82
Kurtosis
7.872
Outliers
30 low · 3 high
Rww
numeric
15
0
5.667 – 19.044mean 12.21
Min.
5.667
1st Qu.
11.183
Median
12.7055
Mean
12.209
3rd Qu.
13.7462
Max.
19.044
Std. dev
3.2519
Skewness
-0.3171
Kurtosis
-0.2301
Outliers
32 low · 1 high
D.D
numeric
12
0
10 – 66mean 36.41
Min.
10
1st Qu.
26.25
Median
36
Mean
36.4051
3rd Qu.
45
Max.
66
Std. dev
15.0392
Skewness
0.0957
Kurtosis
-0.8907
Wap
integer
15
0
18 – 1836mean 242.8
Min.
18
1st Qu.
65
Median
99
Mean
242.75
3rd Qu.
181
Max.
1836
Std. dev
405.711
Skewness
3.026
Kurtosis
8.954
Outliers
30 low · 3 high
WhetZ
numeric
20
0
13.929 – 290.512mean 104.7
Min.
13.929
1st Qu.
55.5267
Median
82.7855
Mean
104.705
3rd Qu.
133.014
Max.
290.512
Std. dev
72.2007
Skewness
0.9527
Kurtosis
0.0914
Outliers
10 low · 1 high
Whetm
numeric
20
0
13.933 – 290.529mean 104.7
Min.
13.933
1st Qu.
55.538
Median
82.796
Mean
104.716
3rd Qu.
133.025
Max.
290.529
Std. dev
72.2047
Skewness
0.9527
Kurtosis
0.0912
Outliers
10 low · 1 high
Whetv
numeric
20
0
23.48 – 331.699mean 133
Min.
23.48
1st Qu.
74.9737
Median
110.731
Mean
132.995
3rd Qu.
162.52
Max.
331.699
Std. dev
82.6318
Skewness
0.8532
Kurtosis
-0.1911
Outliers
10 low · 1 high
Whete
numeric
20
0
13.969 – 290.718mean 105.6
Min.
13.969
1st Qu.
55.6247
Median
85.937
Mean
105.609
3rd Qu.
133.169
Max.
290.718
Std. dev
71.9304
Skewness
0.9424
Kurtosis
0.0969
Outliers
10 low · 1 high
Whetp
numeric
20
0
25.601 – 341.271mean 138.8
Min.
25.601
1st Qu.
79.652
Median
114.004
Mean
138.831
3rd Qu.
169.478
Max.
341.271
Std. dev
85.5842
Skewness
0.8468
Kurtosis
-0.2347
Outliers
10 low · 1 high
J
numeric
15
0
1.875 – 3.576mean 2.962
Min.
1.875
1st Qu.
2.4655
Median
3.1495
Mean
2.9625
3rd Qu.
3.377
Max.
3.576
Std. dev
0.5353
Skewness
-0.7389
Kurtosis
-1.102
JhetZ
numeric
20
0
2.382 – 3.938mean 3.429
Min.
2.382
1st Qu.
3.1113
Median
3.6575
Mean
3.4295
3rd Qu.
3.866
Max.
3.938
Std. dev
0.534
Skewness
-0.8074
Kurtosis
-1.052
Jhetm
numeric
19
0
2.382 – 3.938mean 3.429
Min.
2.382
1st Qu.
3.1105
Median
3.657
Mean
3.4292
3rd Qu.
3.866
Max.
3.938
Std. dev
0.5338
Skewness
-0.8069
Kurtosis
-1.052
Jhetv
numeric
20
0
1.88 – 3.248mean 2.671
Min.
1.88
1st Qu.
2.3813
Median
2.859
Mean
2.6712
3rd Qu.
2.9568
Max.
3.248
Std. dev
0.4052
Skewness
-0.5274
Kurtosis
-1.146
Jhete
numeric
20
0
2.381 – 3.933mean 3.389
Min.
2.381
1st Qu.
3.105
Median
3.622
Mean
3.3893
3rd Qu.
3.7215
Max.
3.933
Std. dev
0.5125
Skewness
-0.7735
Kurtosis
-1.03
Jhetp
numeric
20
0
1.773 – 3.138mean 2.567
Min.
1.773
1st Qu.
2.3157
Median
2.716
Mean
2.5671
3rd Qu.
2.8692
Max.
3.138
Std. dev
0.4077
Skewness
-0.5225
Kurtosis
-1.085
MAXDN
numeric
18
0
2.387 – 2.961mean 2.684
Min.
2.387
1st Qu.
2.5993
Median
2.653
Mean
2.6843
3rd Qu.
2.7908
Max.
2.961
Std. dev
0.1349
Skewness
0.1966
Kurtosis
-0.3428
MAXDP
numeric
20
0
2.243 – 3.626mean 3.027
Min.
2.243
1st Qu.
2.8535
Median
3.0855
Mean
3.0269
3rd Qu.
3.1855
Max.
3.626
Std. dev
0.3143
Skewness
-0.5234
Kurtosis
0.1607
Outliers
11 low · 0 high
DELS
numeric
20
0
8.824 – 22.293mean 15.63
Min.
8.824
1st Qu.
13.004
Median
15.19
Mean
15.6306
3rd Qu.
19.1378
Max.
22.293
Std. dev
3.7739
Skewness
0.1315
Kurtosis
-1.167
TIE
numeric
20
0
4.198 – 36.751mean 21.07
Min.
4.198
1st Qu.
16.029
Median
22.277
Mean
21.069
3rd Qu.
25.2215
Max.
36.751
Std. dev
8.4828
Skewness
-0.1464
Kurtosis
-0.7834
S0K
numeric
13
0
11.61 – 58.603mean 29.88
Min.
11.61
1st Qu.
23.5
Median
28.529
Mean
29.8763
3rd Qu.
34.4278
Max.
58.603
Std. dev
10.8449
Skewness
0.6764
Kurtosis
0.3668
Outliers
10 low · 1 high
S1K
numeric
17
0
4.597 – 11.195mean 8.166
Min.
4.597
1st Qu.
7.4055
Median
8.4155
Mean
8.1657
3rd Qu.
9.234
Max.
11.195
Std. dev
1.6452
Skewness
-0.4228
Kurtosis
-0.5265
Outliers
11 low · 0 high
S2K
numeric
17
0
1.875 – 5.796mean 3.535
Min.
1.875
1st Qu.
2.7885
Median
3.49
Mean
3.5349
3rd Qu.
4.114
Max.
5.796
Std. dev
1.0458
Skewness
0.3314
Kurtosis
-0.5444
S3K
numeric
18
0
1.283 – 6.666mean 3.37
Min.
1.283
1st Qu.
2.4875
Median
2.86
Mean
3.3699
3rd Qu.
4.2058
Max.
6.666
Std. dev
1.3158
Skewness
0.687
Kurtosis
-0.2304
PHI
numeric
17
0
1.607 – 5.407mean 3.145
Min.
1.607
1st Qu.
2.5895
Median
3.005
Mean
3.145
3rd Qu.
3.5215
Max.
5.407
Std. dev
1.041
Skewness
0.622
Kurtosis
-0.3496
Outliers
20 low · 2 high
BLI
numeric
20
0
0.84 – 1.518mean 1.003
Min.
0.84
1st Qu.
0.8892
Median
0.943
Mean
1.0027
3rd Qu.
1.0965
Max.
1.518
Std. dev
0.1635
Skewness
1.548
Kurtosis
2.275
Outliers
10 low · 1 high
PW2
numeric
14
0
0.517 – 0.588mean 0.5646
Min.
0.517
1st Qu.
0.557
Median
0.569
Mean
0.5646
3rd Qu.
0.5735
Max.
0.588
Std. dev
0.0181
Skewness
-1.046
Kurtosis
0.4829
Outliers
11 low · 0 high
PW3
numeric
13
0
0.2 – 0.337mean 0.2866
Min.
0.2
1st Qu.
0.266
Median
0.2905
Mean
0.2866
3rd Qu.
0.3078
Max.
0.337
Std. dev
0.0316
Skewness
-0.6857
Kurtosis
0.5118
Outliers
11 low · 0 high
PW4
numeric
13
0
0 – 0.162mean 0.0871
Min.
0
1st Qu.
0.075
Median
0.0885
Mean
0.0871
3rd Qu.
0.1075
Max.
0.162
Std. dev
0.0398
Skewness
-0.5033
Kurtosis
0.2047
Zeros
2
Outliers
32 low · 1 high
PW5
numeric
11
0
0 – 0.087mean 0.035
Min.
0
1st Qu.
0
Median
0.043
Mean
0.035
3rd Qu.
0.047
Max.
0.087
Std. dev
0.0274
Skewness
0.0212
Kurtosis
-1.13
Zeros
6
PJI2
numeric
4
0
0.5 – 1mean 0.8584
Min.
0.5
1st Qu.
0.667
Median
1
Mean
0.8584
3rd Qu.
1
Max.
1
Std. dev
0.1874
Skewness
-0.6727
Kurtosis
-1.239
CSI
integer
15
0
19 – 195mean 78.6
Min.
19
1st Qu.
43
Median
63
Mean
78.6
3rd Qu.
100
Max.
195
Std. dev
46.9147
Skewness
0.8688
Kurtosis
-0.1609
Outliers
10 low · 1 high
ECC
integer
14
0
13 – 95mean 44.35
Min.
13
1st Qu.
27
Median
38
Mean
44.35
3rd Qu.
55.5
Max.
95
Std. dev
22.7764
Skewness
0.6425
Kurtosis
-0.6418
AECC
numeric
13
0
2.6 – 6.583mean 4.461
Min.
2.6
1st Qu.
3.375
Median
4.222
Mean
4.4611
3rd Qu.
5.1668
Max.
6.583
Std. dev
1.2298
Skewness
0.1942
Kurtosis
-1.266
DECC
numeric
14
0
0.444 – 1.153mean 0.7478
Min.
0.444
1st Qu.
0.6218
Median
0.691
Mean
0.7478
3rd Qu.
0.8335
Max.
1.153
Std. dev
0.1946
Skewness
0.5572
Kurtosis
-0.6881
Outliers
10 low · 1 high
MDDD
numeric
15
0
1.36 – 8.213mean 4.143
Min.
1.36
1st Qu.
2.8285
Median
3.852
Mean
4.143
3rd Qu.
4.9
Max.
8.213
Std. dev
1.8173
Skewness
0.539
Kurtosis
-0.5607
Outliers
10 low · 1 high
UNIP
integer
14
0
5 – 35mean 17.15
Min.
5
1st Qu.
11
Median
15
Mean
17.15
3rd Qu.
21.25
Max.
35
Std. dev
8.3683
Skewness
0.5712
Kurtosis
-0.7742
CENT
integer
15
0
11 – 213mean 69.75
Min.
11
1st Qu.
40.5
Median
57.5
Mean
69.75
3rd Qu.
79
Max.
213
Std. dev
48.283
Skewness
1.343
Kurtosis
1.545
Outliers
20 low · 2 high
VAR
integer
12
0
4 – 30mean 13.45
Min.
4
1st Qu.
8
Median
12
Mean
13.45
3rd Qu.
16.5
Max.
30
Std. dev
6.9697
Skewness
0.7368
Kurtosis
-0.2886
Outliers
10 low · 1 high
BAC
integer
10
0
6 – 38mean 24.55
Min.
6
1st Qu.
18.25
Median
26.5
Mean
24.55
3rd Qu.
33
Max.
38
Std. dev
9.3498
Skewness
-0.3624
Kurtosis
-1.288
Lop
numeric
14
0
0.918 – 2.117mean 1.513
Min.
0.918
1st Qu.
1.359
Median
1.436
Mean
1.5134
3rd Qu.
1.761
Max.
2.117
Std. dev
0.3034
Skewness
-0.0667
Kurtosis
-0.5989
ICR
numeric
13
0
0.918 – 2.237mean 1.655
Min.
0.918
1st Qu.
1.4382
Median
1.53
Mean
1.6546
3rd Qu.
1.908
Max.
2.237
Std. dev
0.3714
Skewness
-0.1767
Kurtosis
-0.7849
D.Dr05
numeric
4
0
0 – 31.614mean 4.016
Min.
0
1st Qu.
0
Median
0
Mean
4.016
3rd Qu.
0
Max.
31.614
Std. dev
10.0184
Skewness
1.96
Kurtosis
2.145
Zeros
17
D.Dr06
numeric
4
0
0 – 44.403mean 6.006
Min.
0
1st Qu.
0
Median
0
Mean
6.0065
3rd Qu.
0
Max.
44.403
Std. dev
14.7463
Skewness
1.855
Kurtosis
1.592
Zeros
17
T.N..N.
integer
6
0
0 – 19mean 2.4
Min.
0
1st Qu.
0
Median
0
Mean
2.4
3rd Qu.
4.25
Max.
19
Std. dev
4.7506
Skewness
2.217
Kurtosis
4.712
Zeros
14
Outliers
10 low · 1 high
T.N..O.
integer
10
0
6 – 50mean 13.7
Min.
6
1st Qu.
6
Median
9
Mean
13.7
3rd Qu.
18.5
Max.
50
Std. dev
10.9789
Skewness
1.807
Kurtosis
3.269
Outliers
10 low · 1 high
T.O..O.
integer
7
0
0 – 24mean 4.9
Min.
0
1st Qu.
0
Median
0
Mean
4.9
3rd Qu.
8.5
Max.
24
Std. dev
7.6907
Skewness
1.187
Kurtosis
0.0178
Zeros
13
Outliers
10 low · 1 high
The same data in 2 other packages

This data is identical to the data these packages carry, down to the byte.

protrRcpiBioconductor

The structure fingerprint found nothing beyond this list.

Version history
VersionReleasedSizeChangeStored asConfidence
1.2.12019-07-0520 × 78Unchangedrda · gzip
version 2 · 4.8 KB
exact
1.1.22019-04-0420 × 78Unchangedrda · gzip
version 2 · 4.8 KB
exact
1.1.12019-01-1520 × 78–rda · gzip
version 2 · 4.8 KB
exact

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