TCH1516_PreSaved_DataMapObj
`Assessment` Objects for *Staphylococcus aureus* subsp. *aureus* strain USA300_TCH1516
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 6.5 MB
File
data/TCH1516_PreSaved_DataMapObj.rda
Fingerprint
1d688535
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD012538 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CP000730.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 2,872,915
Total length
17,237,509
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
7 characters
Species
character
1
0
9 characters
GenomeLength
integer
1
0
2872915
StopsByFramelist60numeric
Element class
numeric
Element length
66,580 – 68,739
Total length
404,459
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric67,586070 – 2872897mean 1.404e+6
Min.
70
1st Qu.
707000
Median
1367065
Mean
1.4042e+6
3rd Qu.
2.11742e+6
Max.
2872897
Std. dev
822340
Skewness
0.0511
Kurtosis
-1.183
Order
ascending
[[2]]numeric68,041032 – 2872880mean 1.384e+6
Min.
32
1st Qu.
671963
Median
1337180
Mean
1.38395e+6
3rd Qu.
2087096
Max.
2872880
Std. dev
831283
Skewness
0.093
Kurtosis
-1.173
Order
ascending
[[3]]numeric66,580081 – 2872857mean 1.403e+6
Min.
81
1st Qu.
692832
Median
1.36891e+6
Mean
1.40313e+6
3rd Qu.
2.11728e+6
Max.
2872857
Std. dev
822208
Skewness
0.0769
Kurtosis
-1.187
Order
ascending
[[4]]numeric66,77507 – 2872912mean 1.402e+6
Min.
7
1st Qu.
689473
Median
1346491
Mean
1.40177e+6
3rd Qu.
2.11085e+6
Max.
2872912
Std. dev
824594
Skewness
0.0753
Kurtosis
-1.186
Order
ascending
[[5]]numeric66,73802 – 2872883mean 1.403e+6
Min.
2
1st Qu.
682280
Median
1387706
Mean
1.40322e+6
3rd Qu.
2.11605e+6
Max.
2872883
Std. dev
828369
Skewness
0.0416
Kurtosis
-1.195
Order
ascending
[[6]]numeric68,739024 – 2872905mean 1.39e+6
Min.
24
1st Qu.
691065
Median
1357860
Mean
1.39037e+6
3rd Qu.
2.09078e+6
Max.
2872905
Std. dev
819691
Skewness
0.0962
Kurtosis
-1.157
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
2,872,915 – 2,872,915
Total length
2,872,915
[[2]]list10numeric
Element class
numeric
Element length
2,872,915 – 2,872,915
Total length
2,872,915
[[3]]list10numeric
Element class
numeric
Element length
2,872,915 – 2,872,915
Total length
2,872,915
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
2,872,915 – 2,872,915
Total length
2,872,915
[[2]]list10numeric
Element class
numeric
Element length
2,872,915 – 2,872,915
Total length
2,872,915
[[3]]list10numeric
Element class
numeric
Element length
2,872,915 – 2,872,915
Total length
2,872,915
FwdCoverageinteger1,76200 – 1878mean 489.3
Min.
0
1st Qu.
81
Median
444
Mean
489.336
3rd Qu.
913
Max.
1878
Std. dev
382.838
Skewness
0.1969
Kurtosis
-1.585
Zeros
2
FwdConStartsinteger1,2812,713,2390 – 1875mean 316.3
Min.
0
1st Qu.
74
Median
156
Mean
316.326
3rd Qu.
535
Max.
1875
Std. dev
305.855
Skewness
0.9901
Kurtosis
-0.3705
Zeros
1
Outliers
1600 low · 160 high
Longest gap
785
Leading
49
Trailing
73
FwdConStopsinteger1,28300 – 1836mean 33.39
Min.
0
1st Qu.
0
Median
0
Mean
33.3943
3rd Qu.
0
Max.
1836
Std. dev
126.606
Skewness
4.891
Kurtosis
25.69
Zeros
2,349,072
RevCoveragenumeric1,76200 – 1878mean 489.3
Min.
0
1st Qu.
81
Median
444
Mean
489.336
3rd Qu.
913
Max.
1878
Std. dev
382.838
Skewness
0.1969
Kurtosis
-1.585
Zeros
2
RevConStartsinteger1,2532,716,0950 – 1868mean 315.3
Min.
0
1st Qu.
74
Median
161
Mean
315.295
3rd Qu.
528
Max.
1868
Std. dev
301.419
Skewness
0.9896
Kurtosis
-0.3343
Zeros
1
Outliers
1410 low · 141 high
Longest gap
673
Leading
5
Trailing
11
RevConStopsinteger1,30500 – 1870mean 33.3
Min.
0
1st Qu.
0
Median
0
Mean
33.3036
3rd Qu.
0
Max.
1870
Std. dev
126.088
Skewness
4.907
Kurtosis
25.96
Zeros
2,343,211
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 6.5 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 4.0 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.