Strain168_PreSaved_ResultsObj_Glimmer
`Assessment` Objects for *Bacillus subtilis* subsp. *subtilis* strain 168
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 18 KB
File
data/Strain168_PreSaved_ResultsObj_Glimmer.rda
Fingerprint
18837b7a
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD004565 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CM000487.1
Structure
Distinct
11
Element length
1 – 4,438
Total length
17,883
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
9 characters
Species
character
1
0
11 characters
GenomeLength
integer
1
0
4214547
GeneLeftPosinteger4,4380326 – 4213694mean 2.125e+6
Min.
326
1st Qu.
1.09026e+6
Median
2169698
Mean
2.12527e+6
3rd Qu.
3.15087e+6
Max.
4213694
Std. dev
1.20671e+6
Skewness
-0.0107
Kurtosis
-1.188
GeneRightPosinteger4,43801750 – 4214053mean 2.126e+6
Min.
1750
1st Qu.
1.09225e+6
Median
2169844
Mean
2.1261e+6
3rd Qu.
3.15242e+6
Max.
4214053
Std. dev
1.20671e+6
Skewness
-0.0107
Kurtosis
-1.188
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
7 characters
NumGenes
integer
1
0
4438
N_CS-_PE+_ORFsnumeric5400 – 3463711·15 × 6 matrixmean 6.846e+5
Min.
0
1st Qu.
2
Median
62
Mean
684648
3rd Qu.
1.67555e+6
Max.
3463711
Std. dev
1.097e+6
Skewness
1.192
Kurtosis
-0.1546
Zeros
10
N_CS<_PE+_ORFsnumeric2800 – 4197810·6 × 6 matrixmean 3.62e+5
Min.
0
1st Qu.
2.5
Median
121
Mean
361969
3rd Qu.
143903
Max.
4197810
Std. dev
1.02449e+6
Skewness
3.019
Kurtosis
8.108
Zeros
5
Outliers
40 low · 4 high
CategoryAssignments
character
12
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 18 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 18 KB | exact |
| 3.8 | 2018-10-30 | 11 elements | – | rda · xz version 2 · 18 KB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.