Strain168_PreSaved_DataMapObj
`Assessment` Objects for *Bacillus subtilis* subsp. *subtilis* strain 168
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 4.7 MB
File
data/Strain168_PreSaved_DataMapObj.rda
Fingerprint
253a0c14
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD004565 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CM000487.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 4,214,547
Total length
25,287,301
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
9 characters
Species
character
1
0
11 characters
GenomeLength
integer
1
0
4214547
StopsByFramelist60numeric
Element class
numeric
Element length
63,276 – 65,129
Total length
385,361
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric63,733019 – 4214440mean 2.049e+6
Min.
19
1st Qu.
996121
Median
2042899
Mean
2.04854e+6
3rd Qu.
3059113
Max.
4214440
Std. dev
1.20855e+6
Skewness
0.0462
Kurtosis
-1.157
Order
ascending
[[2]]numeric64,2150113 – 4214489mean 2.087e+6
Min.
113
1st Qu.
1070156
Median
2081297
Mean
2.08741e+6
3rd Qu.
3.11078e+6
Max.
4214489
Std. dev
1.20083e+6
Skewness
0.0212
Kurtosis
-1.145
Order
ascending
[[3]]numeric64,6550105 – 4214529mean 2.066e+6
Min.
105
1st Qu.
1012335
Median
2046096
Mean
2.06553e+6
3rd Qu.
3112581
Max.
4214529
Std. dev
1.21772e+6
Skewness
0.0425
Kurtosis
-1.179
Order
ascending
[[4]]numeric64,353052 – 4214512mean 2.077e+6
Min.
52
1st Qu.
1084315
Median
2030392
Mean
2.07741e+6
3rd Qu.
3078349
Max.
4214512
Std. dev
1.19273e+6
Skewness
0.0492
Kurtosis
-1.117
Order
ascending
[[5]]numeric63,276074 – 4214528mean 2.071e+6
Min.
74
1st Qu.
1.04783e+6
Median
2.03708e+6
Mean
2.07073e+6
3rd Qu.
3.10363e+6
Max.
4214528
Std. dev
1.20439e+6
Skewness
0.0475
Kurtosis
-1.159
Order
ascending
[[6]]numeric65,129012 – 4214262mean 2.064e+6
Min.
12
1st Qu.
1040112
Median
2027172
Mean
2.06448e+6
3rd Qu.
3088227
Max.
4214262
Std. dev
1.19862e+6
Skewness
0.0459
Kurtosis
-1.144
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
4,214,547 – 4,214,547
Total length
4,214,547
[[2]]list10numeric
Element class
numeric
Element length
4,214,547 – 4,214,547
Total length
4,214,547
[[3]]list10numeric
Element class
numeric
Element length
4,214,547 – 4,214,547
Total length
4,214,547
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
4,214,547 – 4,214,547
Total length
4,214,547
[[2]]list10numeric
Element class
numeric
Element length
4,214,547 – 4,214,547
Total length
4,214,547
[[3]]list10numeric
Element class
numeric
Element length
4,214,547 – 4,214,547
Total length
4,214,547
FwdCoverageinteger3,05300 – 4342mean 197
Min.
0
1st Qu.
1
Median
1
Mean
197.04
3rd Qu.
39
Max.
4342
Std. dev
391.033
Skewness
1.879
Kurtosis
2.849
Zeros
309,792
Outliers
976,9340 low · 976934 high
FwdConStartsinteger1,7894,006,1300 – 4279mean 107.8
Min.
0
1st Qu.
1
Median
1
Mean
107.758
3rd Qu.
3
Max.
4279
Std. dev
296.53
Skewness
2.902
Kurtosis
8.37
Zeros
20,437
Outliers
43,0720 low · 43072 high
Longest gap
287
Leading
65
Trailing
5
FwdConStopsinteger1,85200 – 4279mean 10.45
Min.
0
1st Qu.
0
Median
0
Mean
10.4523
3rd Qu.
0
Max.
4279
Std. dev
95.1387
Skewness
10.21
Kurtosis
112.8
Zeros
3,912,235
RevCoveragenumeric3,05300 – 4342mean 197
Min.
0
1st Qu.
1
Median
1
Mean
197.04
3rd Qu.
39
Max.
4342
Std. dev
391.033
Skewness
1.879
Kurtosis
2.849
Zeros
309,792
Outliers
976,9340 low · 976934 high
RevConStartsinteger1,6154,005,2060 – 3266mean 97.73
Min.
0
1st Qu.
1
Median
1
Mean
97.7272
3rd Qu.
3
Max.
3266
Std. dev
278.639
Skewness
2.98
Kurtosis
8.386
Zeros
21,085
Outliers
40,9920 low · 40992 high
Longest gap
281
Leading
6
Trailing
27
RevConStopsinteger1,84700 – 3186mean 10.62
Min.
0
1st Qu.
0
Median
0
Mean
10.6165
3rd Qu.
0
Max.
3186
Std. dev
95.4527
Skewness
10.1
Kurtosis
109.9
Zeros
3,900,479
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 4.7 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 2.9 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.