Strain10403S_PreSaved_ResultsObj_GenBank
`Assessment` Objects for *Listeria monocytogenes* strain 10403S
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 3 · 12 KB
File
data/Strain10403S_PreSaved_ResultsObj_GenBank.rda
Fingerprint
ff8258b8
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD010000 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/NC_017544.1
Structure
Distinct
11
Element length
0 – 2,841
Total length
11,375
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
12 characters
Species
character
1
0
16 characters
GenomeLength
integer
1
0
2903106
GeneLeftPosinteger2,8410318 – 2902449mean 1.454e+6
Min.
318
1st Qu.
732648
Median
1434864
Mean
1.4544e+6
3rd Qu.
2187491
Max.
2902449
Std. dev
834349
Skewness
0.0139
Kurtosis
-1.207
GeneRightPosinteger2,84101673 – 2902919mean 1.455e+6
Min.
1673
1st Qu.
732971
Median
1435571
Mean
1.45531e+6
3rd Qu.
2188356
Max.
2902919
Std. dev
834349
Skewness
0.0139
Kurtosis
-1.207
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
7 characters
NumGenes
integer
1
0
2841
N_CS-_PE+_ORFs
numeric
0
0
0 values
N_CS<_PE+_ORFsnumeric600 – 1236142·1 × 6 matrixmean 4.12e+5
Min.
0
1st Qu.
3
Median
79.5
Mean
412049
3rd Qu.
927031
Max.
1236142
Std. dev
638281
Skewness
0.5379
Kurtosis
-1.958
Zeros
1
CategoryAssignments
character
12
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 3 · 12 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | – | rda · xz version 3 · 12 KB | exact |