Strain10403S_PreSaved_DataMapObj

`Assessment` Objects for *Listeria monocytogenes* strain 10403S

Bundled with AssessORFData · exported, loads via data()

Class

Assessment

Assessment/DataMap

Elements

Missing

Format

rda · xz

version 2 · 4.1 MB

File

data/Strain10403S_PreSaved_DataMapObj.rda

Fingerprint

c894c039

Format documented

Yes

Source

Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD010000 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/NC_017544.1

Structure

Distinct

Nesting depth

Element length

1 – 2,903,106

Total length

17,418,655

Elements

Element

Type

Distinct

Missing

Summary

StrainID

character

12 characters

Species

character

16 characters

GenomeLength

integer

2903106

StopsByFrame

list

numeric

Element class

numeric

Element length

51,854 – 54,683

Total length

321,217

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

numeric

51,854

1 – 2903083mean 1.446e+6

Min.

1st Qu.

732859

Median

1.41846e+6

Mean

1.446e+6

3rd Qu.

2178670

Max.

2903083

Std. dev

834718

Skewness

0.0327

Kurtosis

-1.189

Order

ascending

[[2]]

numeric

54,309

5 – 2903060mean 1.417e+6

Min.

1st Qu.

694814

Median

1395236

Mean

1.41691e+6

3rd Qu.

2150090

Max.

2903060

Std. dev

839229

Skewness

0.045

Kurtosis

-1.208

Order

ascending

[[3]]

numeric

54,471

57 – 2903076mean 1.397e+6

Min.

1st Qu.

652678

Median

1360032

Mean

1.39658e+6

3rd Qu.

2137008

Max.

2903076

Std. dev

842131

Skewness

0.0845

Kurtosis

-1.204

Order

ascending

[[4]]

numeric

53,567

19 – 2903101mean 1.441e+6

Min.

1st Qu.

720514

Median

1433119

Mean

1.44071e+6

3rd Qu.

2.14734e+6

Max.

2903101

Std. dev

834634

Skewness

0.0205

Kurtosis

-1.182

Order

ascending

[[5]]

numeric

52,333

23 – 2903060mean 1.428e+6

Min.

1st Qu.

682751

Median

1418630

Mean

1.4277e+6

3rd Qu.

2163278

Max.

2903060

Std. dev

845096

Skewness

0.0327

Kurtosis

-1.216

Order

ascending

[[6]]

numeric

54,683

30 – 2903049mean 1.426e+6

Min.

1st Qu.

683523

Median

1392027

Mean

1.4264e+6

3rd Qu.

2.15304e+6

Max.

2903049

Std. dev

834330

Skewness

0.057

Kurtosis

-1.213

Order

ascending

NTermProteomics

logical

0 true·1 false

FwdProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

2,903,106 – 2,903,106

Total length

2,903,106

[[2]]

list

numeric

Element class

numeric

Element length

2,903,106 – 2,903,106

Total length

2,903,106

[[3]]

list

numeric

Element class

numeric

Element length

2,903,106 – 2,903,106

Total length

2,903,106

RevProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

2,903,106 – 2,903,106

Total length

2,903,106

[[2]]

list

numeric

Element class

numeric

Element length

2,903,106 – 2,903,106

Total length

2,903,106

[[3]]

list

numeric

Element class

numeric

Element length

2,903,106 – 2,903,106

Total length

2,903,106

FwdCoverage

integer

1,645

0 – 1699mean 926.8

Min.

1st Qu.

967

Median

977

Mean

926.802

3rd Qu.

995

Max.

1699

Std. dev

183.251

Skewness

-3.123

Kurtosis

9.86

Zeros

Outliers

338,609324659 low · 13950 high

FwdConStarts

integer

1,316

2,759,462

1 – 1694mean 840.5

Min.

1st Qu.

896

Median

959

Mean

840.528

3rd Qu.

974

Max.

1694

Std. dev

246.567

Skewness

-1.647

Kurtosis

1.422

Outliers

30,41730068 low · 349 high

Longest gap

1,349

Leading

Trailing

FwdConStops

integer

1,312

0 – 1677mean 50.79

Min.

1st Qu.

Median

Mean

50.7936

3rd Qu.

Max.

1677

Std. dev

205.853

Skewness

4.048

Kurtosis

14.79

Zeros

2,522,832

RevCoverage

integer

1,645

0 – 1699mean 926.8

Min.

1st Qu.

967

Median

977

Mean

926.802

3rd Qu.

995

Max.

1699

Std. dev

183.251

Skewness

-3.123

Kurtosis

9.86

Zeros

Outliers

338,609324659 low · 13950 high

RevConStarts

integer

1,236

2,756,332

1 – 1692mean 843.6

Min.

1st Qu.

901

Median

960

Mean

843.64

3rd Qu.

975

Max.

1692

Std. dev

244.932

Skewness

-1.706

Kurtosis

1.559

Outliers

30,51530277 low · 238 high

Longest gap

300

Leading

Trailing

RevConStops

integer

1,283

0 – 1683mean 50.75

Min.

1st Qu.

Median

Mean

50.7527

3rd Qu.

Max.

1683

Std. dev

205.785

Skewness

4.051

Kurtosis

14.81

Zeros

2,518,420

NumRelatedGenomes

integer

1000

HasProteomics

logical

1 true·0 false

HasConservation

logical

1 true·0 false

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.22	2025-10-29	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.21	2025-04-15	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.20	2024-10-29	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.19	2024-04-30	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.18	2023-10-24	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.17	2023-04-25	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.16	2022-11-01	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.15	2022-04-26	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.14	2021-10-26	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.13	2021-05-19	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.12	2020-10-27	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.11	2020-04-27	16 elements	Unchanged	rda · xz version 2 · 4.1 MB	exact
3.10	2019-10-29	16 elements	–	rda · xz version 2 · 4.1 MB	exact