SL1344_PreSaved_ResultsObj_Prodigal
`Assessment` Objects for *Salmonella enterica* subsp. *enterica* serovar Typhimurium strain SL1344
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 20 KB
File
data/SL1344_PreSaved_ResultsObj_Prodigal.rda
Fingerprint
62c77d7a
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD005579 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/FQ312003.1
Structure
Distinct
11
Element length
0 – 4,549
Total length
18,213
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
6 characters
Species
character
1
0
14 characters
GenomeLength
integer
1
0
4878012
GeneLeftPosnumeric4,5490337 – 4877302mean 2.424e+6
Min.
337
1st Qu.
1235365
Median
2400313
Mean
2.4242e+6
3rd Qu.
3609469
Max.
4877302
Std. dev
1.38875e+6
Skewness
0.0258
Kurtosis
-1.176
Order
ascending
GeneRightPosnumeric4,54902799 – 4877988mean 2.425e+6
Min.
2799
1st Qu.
1236099
Median
2400738
Mean
2.42514e+6
3rd Qu.
3609972
Max.
4877988
Std. dev
1.38876e+6
Skewness
0.0258
Kurtosis
-1.176
Order
ascending
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
8 characters
NumGenes
integer
1
0
4549
N_CS-_PE+_ORFs
numeric
0
0
0 values
N_CS<_PE+_ORFsnumeric1100 – 4067515·2 × 6 matrixmean 6.867e+5
Min.
0
1st Qu.
2.75
Median
150.5
Mean
686682
3rd Qu.
52351
Max.
4067515
Std. dev
1.57923e+6
Skewness
1.569
Kurtosis
0.5282
Zeros
2
Outliers
20 low · 2 high
CategoryAssignments
character
9
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 20 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 20 KB | exact |
| 3.8 | 2018-10-30 | 11 elements | – | rda · xz version 2 · 20 KB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.