PAO1_PreSaved_ResultsObj_Prodigal
`Assessment` Objects for *Pseudomonas aeruginosa* strain PAO1
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 26 KB
File
data/PAO1_PreSaved_ResultsObj_Prodigal.rda
Fingerprint
7b892c0f
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD004560 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/AE004091.2
Structure
Distinct
11
Element length
1 – 5,681
Total length
22,777
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
4 characters
Species
character
1
0
13 characters
GenomeLength
integer
1
0
6264404
GeneLeftPosnumeric5,6810483 – 6264227mean 3.107e+6
Min.
483
1st Qu.
1516703
Median
3128292
Mean
3.10735e+6
3rd Qu.
4668490
Max.
6264227
Std. dev
1.81491e+6
Skewness
0.0168
Kurtosis
-1.213
Order
ascending
GeneRightPosnumeric5,68102027 – 6264361mean 3.108e+6
Min.
2027
1st Qu.
1517119
Median
3129071
Mean
3.10834e+6
3rd Qu.
4669290
Max.
6264361
Std. dev
1.81493e+6
Skewness
0.0168
Kurtosis
-1.213
Order
ascending
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
8 characters
NumGenes
integer
1
0
5681
N_CS-_PE+_ORFsnumeric2600 – 3536678·6 × 6 matrixmean 3.851e+5
Min.
0
1st Qu.
2
Median
145.5
Mean
385121
3rd Qu.
624450
Max.
3536678
Std. dev
857470
Skewness
2.759
Kurtosis
7.222
Zeros
5
Outliers
20 low · 2 high
N_CS<_PE+_ORFsnumeric1100 – 5332779·2 × 6 matrixmean 1.022e+6
Min.
0
1st Qu.
3.25
Median
145
Mean
1.02167e+6
3rd Qu.
797030
Max.
5332779
Std. dev
2.03643e+6
Skewness
1.497
Kurtosis
0.3891
Zeros
2
Outliers
20 low · 2 high
CategoryAssignments
character
12
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 26 KB | exact |
| 3.8 | 2018-10-30 | 11 elements | – | rda · xz version 2 · 27 KB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.