PAO1_PreSaved_ResultsObj_GenBank
`Assessment` Objects for *Pseudomonas aeruginosa* strain PAO1
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 23 KB
File
data/PAO1_PreSaved_ResultsObj_GenBank.rda
Fingerprint
cbc6e8cd
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD004560 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/AE004091.2
Structure
Distinct
11
Element length
1 – 5,572
Total length
22,317
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
4 characters
Species
character
1
0
13 characters
GenomeLength
integer
1
0
6264404
GeneLeftPosinteger5,5720483 – 6264227mean 3.111e+6
Min.
483
1st Qu.
1513592
Median
3.14073e+6
Mean
3.11062e+6
3rd Qu.
4673144
Max.
6264227
Std. dev
1.81752e+6
Skewness
0.0147
Kurtosis
-1.217
GeneRightPosinteger5,57202027 – 6264361mean 3.112e+6
Min.
2027
1st Qu.
1.51497e+6
Median
3.14191e+6
Mean
3.11162e+6
3rd Qu.
4673455
Max.
6264361
Std. dev
1.81753e+6
Skewness
0.0147
Kurtosis
-1.217
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
7 characters
NumGenes
integer
1
0
5572
N_CS-_PE+_ORFsnumeric1500 – 788883·3 × 6 matrixmean 1.631e+5
Min.
0
1st Qu.
2.25
Median
142.5
Mean
163135
3rd Qu.
53708.5
Max.
788883
Std. dev
302114
Skewness
1.273
Kurtosis
-0.293
Zeros
2
Outliers
40 low · 4 high
N_CS<_PE+_ORFsnumeric600 – 797241·1 × 6 matrixmean 265748
Min.
0
1st Qu.
1.75
Median
143
Mean
265748
3rd Qu.
597790
Max.
797241
Std. dev
411584
Skewness
0.5379
Kurtosis
-1.958
Zeros
1
CategoryAssignments
character
12
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 23 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | – | rda · xz version 2 · 23 KB | exact |