MGAS5005_PreSaved_DataMapObj
`Assessment` Objects for *Streptococcus pyogenes* strain MGAS5005
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 3.5 MB
File
data/MGAS5005_PreSaved_DataMapObj.rda
Fingerprint
dfef6137
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD012568 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CP000017.2
Structure
Distinct
15
Nesting depth
3
Element length
1 – 1,838,562
Total length
11,031,391
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
8 characters
Species
character
1
0
11 characters
GenomeLength
integer
1
0
1838562
StopsByFramelist60numeric
Element class
numeric
Element length
37,372 – 38,651
Total length
227,603
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric37,372046 – 1838554mean 9.136e+5
Min.
46
1st Qu.
468104
Median
904688
Mean
913625
3rd Qu.
1.35932e+6
Max.
1838554
Std. dev
521808
Skewness
0.0353
Kurtosis
-1.156
Order
ascending
[[2]]numeric38,12705 – 1838528mean 9.096e+5
Min.
5
1st Qu.
459173
Median
898946
Mean
909550
3rd Qu.
1363865
Max.
1838528
Std. dev
528604
Skewness
0.0304
Kurtosis
-1.175
Order
ascending
[[3]]numeric38,136027 – 1838559mean 9.201e+5
Min.
27
1st Qu.
449269
Median
925882
Mean
920099
3rd Qu.
1.38322e+6
Max.
1838559
Std. dev
535523
Skewness
-0.0106
Kurtosis
-1.209
Order
ascending
[[4]]numeric38,651016 – 1838452mean 9.091e+5
Min.
16
1st Qu.
447300
Median
909832
Mean
909061
3rd Qu.
1361689
Max.
1838452
Std. dev
529759
Skewness
0.0049
Kurtosis
-1.192
Order
ascending
[[5]]numeric37,57008 – 1838489mean 9.187e+5
Min.
8
1st Qu.
470170
Median
925750
Mean
918661
3rd Qu.
1.36691e+6
Max.
1838489
Std. dev
524946
Skewness
-0.0235
Kurtosis
-1.171
Order
ascending
[[6]]numeric37,747057 – 1838535mean 9.157e+5
Min.
57
1st Qu.
455224
Median
919983
Mean
915714
3rd Qu.
1371756
Max.
1838535
Std. dev
529825
Skewness
0.0049
Kurtosis
-1.185
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
1,838,562 – 1,838,562
Total length
1,838,562
[[2]]list10numeric
Element class
numeric
Element length
1,838,562 – 1,838,562
Total length
1,838,562
[[3]]list10numeric
Element class
numeric
Element length
1,838,562 – 1,838,562
Total length
1,838,562
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
1,838,562 – 1,838,562
Total length
1,838,562
[[2]]list10numeric
Element class
numeric
Element length
1,838,562 – 1,838,562
Total length
1,838,562
[[3]]list10numeric
Element class
numeric
Element length
1,838,562 – 1,838,562
Total length
1,838,562
FwdCoverageinteger1,64700 – 2013mean 372
Min.
0
1st Qu.
5
Median
251
Mean
371.988
3rd Qu.
704
Max.
2013
Std. dev
361.886
Skewness
0.5877
Kurtosis
-1.078
Zeros
316,196
Outliers
620 low · 62 high
FwdConStartsinteger1,1361,741,4170 – 1755mean 230.9
Min.
0
1st Qu.
0
Median
85
Mean
230.863
3rd Qu.
364
Max.
1755
Std. dev
288.809
Skewness
1.199
Kurtosis
0.3998
Zeros
25,126
Outliers
3,9400 low · 3940 high
Longest gap
232
Trailing
35
FwdConStopsinteger1,11000 – 1768mean 19.05
Min.
0
1st Qu.
0
Median
0
Mean
19.0492
3rd Qu.
0
Max.
1768
Std. dev
91.5023
Skewness
6.404
Kurtosis
47.64
Zeros
1,610,161
RevCoveragenumeric1,64700 – 2013mean 372
Min.
0
1st Qu.
5
Median
251
Mean
371.988
3rd Qu.
704
Max.
2013
Std. dev
361.886
Skewness
0.5877
Kurtosis
-1.078
Zeros
316,196
Outliers
620 low · 62 high
RevConStartsinteger1,1181,742,8230 – 1724mean 220.5
Min.
0
1st Qu.
1
Median
80
Mean
220.454
3rd Qu.
335
Max.
1724
Std. dev
277.481
Skewness
1.266
Kurtosis
0.6743
Zeros
23,645
Outliers
4,9960 low · 4996 high
Longest gap
265
Leading
11
Trailing
36
RevConStopsinteger1,12900 – 1564mean 19.5
Min.
0
1st Qu.
0
Median
0
Mean
19.5046
3rd Qu.
0
Max.
1564
Std. dev
93.0309
Skewness
6.401
Kurtosis
47.65
Zeros
1,600,071
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 2.0 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.