MG1363_PreSaved_DataMapObj

`Assessment` Objects for *Lactococcus lactis* subsp. *cremoris* strain MG1363

Bundled with AssessORFData · exported, loads via data()

Class

Assessment

Assessment/DataMap

Elements

Missing

Format

rda · xz

version 2 · 2.5 MB

File

data/MG1363_PreSaved_DataMapObj.rda

Fingerprint

99a556b1

Format documented

Yes

Source

Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD011263 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/AM406671.1

Structure

Distinct

Nesting depth

Element length

1 – 2,529,478

Total length

15,176,887

Elements

Element

Type

Distinct

Missing

Summary

StrainID

character

6 characters

Species

character

9 characters

GenomeLength

integer

2529478

StopsByFrame

list

numeric

Element class

numeric

Element length

50,081 – 52,835

Total length

309,258

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

numeric

51,831

1363 – 2529475mean 1.239e+6

Min.

1363

1st Qu.

625946

Median

1213231

Mean

1.23852e+6

3rd Qu.

1.8613e+6

Max.

2529475

Std. dev

721359

Skewness

0.0488

Kurtosis

-1.174

Order

ascending

[[2]]

numeric

52,835

41 – 2529467mean 1.241e+6

Min.

1st Qu.

607502

Median

1223036

Mean

1.24076e+6

3rd Qu.

1866569

Max.

2529467

Std. dev

728788

Skewness

0.0447

Kurtosis

-1.19

Order

ascending

[[3]]

numeric

50,081

12 – 2529444mean 1.255e+6

Min.

1st Qu.

623199

Median

1264422

Mean

1.2548e+6

3rd Qu.

1877067

Max.

2529444

Std. dev

726019

Skewness

0.0014

Kurtosis

-1.185

Order

ascending

[[4]]

numeric

51,499

103 – 2529466mean 1.245e+6

Min.

103

1st Qu.

615512

Median

1229149

Mean

1.24474e+6

3rd Qu.

1.86334e+6

Max.

2529466

Std. dev

723683

Skewness

0.0374

Kurtosis

-1.176

Order

ascending

[[5]]

numeric

51,282

26 – 2529371mean 1.241e+6

Min.

1st Qu.

617397

Median

1.22754e+6

Mean

1.24117e+6

3rd Qu.

1.86262e+6

Max.

2529371

Std. dev

726597

Skewness

0.0382

Kurtosis

-1.174

Order

ascending

[[6]]

numeric

51,730

18 – 2529456mean 1.262e+6

Min.

1st Qu.

630230

Median

1270500

Mean

1.26166e+6

3rd Qu.

1.8913e+6

Max.

2529456

Std. dev

731707

Skewness

0.0089

Kurtosis

-1.2

Order

ascending

NTermProteomics

logical

0 true·1 false

FwdProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

2,529,478 – 2,529,478

Total length

2,529,478

[[2]]

list

numeric

Element class

numeric

Element length

2,529,478 – 2,529,478

Total length

2,529,478

[[3]]

list

numeric

Element class

numeric

Element length

2,529,478 – 2,529,478

Total length

2,529,478

RevProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

2,529,478 – 2,529,478

Total length

2,529,478

[[2]]

list

numeric

Element class

numeric

Element length

2,529,478 – 2,529,478

Total length

2,529,478

[[3]]

list

numeric

Element class

numeric

Element length

2,529,478 – 2,529,478

Total length

2,529,478

FwdCoverage

integer

1,895

0 – 3388mean 125.4

Min.

1st Qu.

Median

Mean

125.424

3rd Qu.

Max.

3388

Std. dev

289.832

Skewness

2.336

Kurtosis

4.434

Zeros

1,506,962

Outliers

579,2210 low · 579221 high

FwdConStarts

integer

1,127

2,399,806

0 – 2960mean 82.75

Min.

1st Qu.

Median

Mean

82.7459

3rd Qu.

Max.

2960

Std. dev

219.585

Skewness

3.008

Kurtosis

9.006

Zeros

83,762

Outliers

28,8190 low · 28819 high

Longest gap

710

Trailing

FwdConStops

integer

1,089

0 – 2915mean 5.803

Min.

1st Qu.

Median

Mean

5.8026

3rd Qu.

Max.

2915

Std. dev

56.6736

Skewness

12.71

Kurtosis

183.9

Zeros

2,417,056

RevCoverage

integer

1,895

0 – 3388mean 125.4

Min.

1st Qu.

Median

Mean

125.424

3rd Qu.

Max.

3388

Std. dev

289.832

Skewness

2.336

Kurtosis

4.434

Zeros

1,506,962

Outliers

579,2210 low · 579221 high

RevConStarts

integer

1,082

2,398,486

0 – 2969mean 74.59

Min.

1st Qu.

Median

Mean

74.5946

3rd Qu.

Max.

2969

Std. dev

208.205

Skewness

3.178

Kurtosis

9.73

Zeros

86,156

Outliers

28,7570 low · 28757 high

Longest gap

317

Leading

Trailing

RevConStops

integer

1,112

0 – 2099mean 6.021

Min.

1st Qu.

Median

Mean

6.0214

3rd Qu.

Max.

2099

Std. dev

57.4524

Skewness

12.41

Kurtosis

173.5

Zeros

2,410,890

NumRelatedGenomes

integer

1000

HasProteomics

logical

1 true·0 false

HasConservation

logical

1 true·0 false

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.22	2025-10-29	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.21	2025-04-15	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.20	2024-10-29	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.19	2024-04-30	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.18	2023-10-24	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.17	2023-04-25	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.16	2022-11-01	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.15	2022-04-26	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.14	2021-10-26	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.13	2021-05-19	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.12	2020-10-27	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.11	2020-04-27	16 elements	Unchanged	rda · xz version 2 · 2.5 MB	exact
3.10	2019-10-29	16 elements	–	rda · xz version 2 · 2.5 MB	exact