K_12_MG1655_PreSaved_DataMapObj

`Assessment` Objects for *Escherichia coli* strain K-12 substrain MG1655

Bundled with AssessORFData · exported, loads via data()

Class

Assessment

Assessment/DataMap

Elements

Missing

Format

rda · xz

version 2 · 5.9 MB

File

data/K_12_MG1655_PreSaved_DataMapObj.rda

Fingerprint

2cfa8c7e

Format documented

Yes

Source

Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD005901 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CP025268.1

Structure

Distinct

Nesting depth

Element length

1 – 4,643,559

Total length

27,861,373

Elements

Element

Type

Distinct

Missing

Summary

StrainID

character

11 characters

Species

character

7 characters

GenomeLength

integer

4643559

StopsByFrame

list

numeric

Element class

numeric

Element length

59,527 – 60,677

Total length

359,813

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

numeric

60,059

13 – 4643548mean 2.297e+6

Min.

1st Qu.

1133503

Median

2282485

Mean

2.29723e+6

3rd Qu.

3.46967e+6

Max.

4643548

Std. dev

1.34685e+6

Skewness

0.0367

Kurtosis

-1.213

Order

ascending

[[2]]

numeric

59,527

74 – 4643468mean 2.325e+6

Min.

1st Qu.

1168952

Median

2275373

Mean

2.32516e+6

3rd Qu.

3.51855e+6

Max.

4643468

Std. dev

1.34887e+6

Skewness

0.0201

Kurtosis

-1.222

Order

ascending

[[3]]

numeric

60,281

96 – 4643514mean 2.294e+6

Min.

1st Qu.

1144227

Median

2239839

Mean

2.29367e+6

3rd Qu.

3455940

Max.

4643514

Std. dev

1.34096e+6

Skewness

0.0496

Kurtosis

-1.19

Order

ascending

[[4]]

numeric

59,601

91 – 4643551mean 2.317e+6

Min.

1st Qu.

1180225

Median

2301751

Mean

2.31653e+6

3rd Qu.

3437857

Max.

4643551

Std. dev

1.32083e+6

Skewness

-0.0026

Kurtosis

-1.173

Order

ascending

[[5]]

numeric

60,677

14 – 4643513mean 2.324e+6

Min.

1st Qu.

1211705

Median

2336588

Mean

2.32409e+6

3rd Qu.

3427790

Max.

4643513

Std. dev

1.31584e+6

Skewness

-0.0082

Kurtosis

-1.155

Order

ascending

[[6]]

numeric

59,668

33 – 4643442mean 2.303e+6

Min.

1st Qu.

1.1803e+6

Median

2.31219e+6

Mean

2.30332e+6

3rd Qu.

3.41593e+6

Max.

4643442

Std. dev

1.31483e+6

Skewness

0.0113

Kurtosis

-1.157

Order

ascending

NTermProteomics

logical

1 true·0 false

FwdProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

4,643,559 – 4,643,559

Total length

4,643,559

[[2]]

list

numeric

Element class

numeric

Element length

4,643,559 – 4,643,559

Total length

4,643,559

[[3]]

list

numeric

Element class

numeric

Element length

4,643,559 – 4,643,559

Total length

4,643,559

RevProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

4,643,559 – 4,643,559

Total length

4,643,559

[[2]]

list

numeric

Element class

numeric

Element length

4,643,559 – 4,643,559

Total length

4,643,559

[[3]]

list

numeric

Element class

numeric

Element length

4,643,559 – 4,643,559

Total length

4,643,559

FwdCoverage

integer

2,278

0 – 2361mean 872.4

Min.

1st Qu.

903

Median

973

Mean

872.412

3rd Qu.

982

Max.

2361

Std. dev

229.399

Skewness

-2.02

Kurtosis

4.692

Zeros

1,036

Outliers

908,476868485 low · 39991 high

FwdConStarts

integer

1,614

4,423,930

0 – 2349mean 806.8

Min.

1st Qu.

728

Median

920

Mean

806.776

3rd Qu.

971

Max.

2349

Std. dev

254.085

Skewness

-1.539

Kurtosis

2.056

Zeros

Outliers

19,80019371 low · 429 high

Longest gap

428

Leading

Trailing

FwdConStops

integer

1,531

0 – 2349mean 33.09

Min.

1st Qu.

Median

Mean

33.092

3rd Qu.

Max.

2349

Std. dev

164.548

Skewness

5.159

Kurtosis

25.48

Zeros

4,212,445

RevCoverage

numeric

2,278

0 – 2361mean 872.4

Min.

1st Qu.

903

Median

973

Mean

872.412

3rd Qu.

982

Max.

2361

Std. dev

229.399

Skewness

-2.02

Kurtosis

4.692

Zeros

1,036

Outliers

908,476868485 low · 39991 high

RevConStarts

integer

1,505

4,422,986

0 – 2338mean 809.6

Min.

1st Qu.

740

Median

920

Mean

809.577

3rd Qu.

971

Max.

2338

Std. dev

249.964

Skewness

-1.621

Kurtosis

2.152

Zeros

Outliers

20,85720570 low · 287 high

Longest gap

340

Leading

Trailing

RevConStops

integer

1,523

0 – 2306mean 33.26

Min.

1st Qu.

Median

Mean

33.2555

3rd Qu.

Max.

2306

Std. dev

164.941

Skewness

5.143

Kurtosis

25.28

Zeros

4,207,409

NumRelatedGenomes

integer

1000

HasProteomics

logical

1 true·0 false

HasConservation

logical

1 true·0 false

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.22	2025-10-29	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.21	2025-04-15	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.20	2024-10-29	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.19	2024-04-30	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.18	2023-10-24	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.17	2023-04-25	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.16	2022-11-01	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.15	2022-04-26	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.14	2021-10-26	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.13	2021-05-19	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.12	2020-10-27	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.11	2020-04-27	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.10	2019-10-29	16 elements	Unchanged	rda · xz version 2 · 5.9 MB	exact
3.9	2019-05-02	16 elements	–	rda · xz version 2 · 5.9 MB	exact