Il1403_PreSaved_ResultsObj_GenBank
`Assessment` Objects for *Lactococcus lactis* subsp. *lactis* strain Il1403
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 9.5 KB
File
data/Il1403_PreSaved_ResultsObj_GenBank.rda
Fingerprint
4509fd02
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000494 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/AE005176.1
Structure
Distinct
11
Element length
0 – 2,266
Total length
9,129
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
6 characters
Species
character
1
0
9 characters
GenomeLength
integer
1
0
2365589
GeneLeftPosinteger2,2660358 – 2358906mean 1.163e+6
Min.
358
1st Qu.
562430
Median
1148024
Mean
1.16333e+6
3rd Qu.
1756194
Max.
2358906
Std. dev
681775
Skewness
0.0297
Kurtosis
-1.212
Order
ascending
GeneRightPosinteger2,26601725 – 2359847mean 1.164e+6
Min.
1725
1st Qu.
562966
Median
1.14883e+6
Mean
1.16421e+6
3rd Qu.
1.75731e+6
Max.
2359847
Std. dev
681792
Skewness
0.0296
Kurtosis
-1.212
Order
ascending
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
7 characters
NumGenes
integer
1
0
2266
N_CS-_PE+_ORFsnumeric3800 – 2037213·10 × 6 matrixmean 3.843e+5
Min.
0
1st Qu.
3
Median
92.5
Mean
384303
3rd Qu.
179157
Max.
2037213
Std. dev
706800
Skewness
1.499
Kurtosis
0.4863
Zeros
7
Outliers
140 low · 14 high
N_CS<_PE+_ORFs
numeric
0
0
0 values
CategoryAssignments
character
11
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 9.5 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | – | rda · xz version 2 · 9.5 KB | exact |