Il1403_PreSaved_DataMapObj
`Assessment` Objects for *Lactococcus lactis* subsp. *lactis* strain Il1403
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 2.5 MB
File
data/Il1403_PreSaved_DataMapObj.rda
Fingerprint
b77e5208
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000494 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/AE005176.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 2,365,589
Total length
14,193,553
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
6 characters
Species
character
1
0
9 characters
GenomeLength
integer
1
0
2365589
StopsByFramelist60numeric
Element class
numeric
Element length
48,091 – 49,603
Total length
292,543
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric48,548010 – 2365552mean 1.172e+6
Min.
10
1st Qu.
595827
Median
1.17468e+6
Mean
1.17186e+6
3rd Qu.
1.74542e+6
Max.
2365552
Std. dev
671808
Skewness
0.0262
Kurtosis
-1.171
Order
ascending
[[2]]numeric49,603032 – 2365583mean 1.161e+6
Min.
32
1st Qu.
594542
Median
1143137
Mean
1.16097e+6
3rd Qu.
1.73416e+6
Max.
2365583
Std. dev
672283
Skewness
0.0308
Kurtosis
-1.151
Order
ascending
[[3]]numeric48,20103 – 2365518mean 1.155e+6
Min.
3
1st Qu.
555159
Median
1146777
Mean
1.15505e+6
3rd Qu.
1751985
Max.
2365518
Std. dev
686332
Skewness
0.0465
Kurtosis
-1.214
Order
ascending
[[4]]numeric49,307013 – 2365579mean 1.166e+6
Min.
13
1st Qu.
570594
Median
1149388
Mean
1.16629e+6
3rd Qu.
1.75804e+6
Max.
2365579
Std. dev
684643
Skewness
0.0296
Kurtosis
-1.2
Order
ascending
[[5]]numeric48,793026 – 2365586mean 1.175e+6
Min.
26
1st Qu.
574397
Median
1176743
Mean
1.17537e+6
3rd Qu.
1769969
Max.
2365586
Std. dev
682998
Skewness
0.0147
Kurtosis
-1.205
Order
ascending
[[6]]numeric48,091051 – 2365557mean 1.174e+6
Min.
51
1st Qu.
604114
Median
1160328
Mean
1.17395e+6
3rd Qu.
1.75374e+6
Max.
2365557
Std. dev
679052
Skewness
0.0271
Kurtosis
-1.168
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
2,365,589 – 2,365,589
Total length
2,365,589
[[2]]list10numeric
Element class
numeric
Element length
2,365,589 – 2,365,589
Total length
2,365,589
[[3]]list10numeric
Element class
numeric
Element length
2,365,589 – 2,365,589
Total length
2,365,589
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
2,365,589 – 2,365,589
Total length
2,365,589
[[2]]list10numeric
Element class
numeric
Element length
2,365,589 – 2,365,589
Total length
2,365,589
[[3]]list10numeric
Element class
numeric
Element length
2,365,589 – 2,365,589
Total length
2,365,589
FwdCoverageinteger1,93000 – 3270mean 139.5
Min.
0
1st Qu.
0
Median
0
Mean
139.545
3rd Qu.
31
Max.
3270
Std. dev
303.438
Skewness
2.163
Kurtosis
3.634
Zeros
1,345,778
Outliers
514,1250 low · 514125 high
FwdConStartsinteger1,1342,241,7900 – 3228mean 94.73
Min.
0
1st Qu.
0
Median
0
Mean
94.7339
3rd Qu.
6
Max.
3228
Std. dev
234.33
Skewness
2.759
Kurtosis
7.505
Zeros
76,558
Outliers
28,2010 low · 28201 high
Longest gap
232
Leading
91
Trailing
33
FwdConStopsinteger1,08900 – 3203mean 6.459
Min.
0
1st Qu.
0
Median
0
Mean
6.4589
3rd Qu.
0
Max.
3203
Std. dev
59.3629
Skewness
11.97
Kurtosis
164.9
Zeros
2,251,664
RevCoveragenumeric1,93000 – 3270mean 139.5
Min.
0
1st Qu.
0
Median
0
Mean
139.545
3rd Qu.
31
Max.
3270
Std. dev
303.438
Skewness
2.163
Kurtosis
3.634
Zeros
1,345,778
Outliers
514,1250 low · 514125 high
RevConStartsinteger1,0862,243,8770 – 3236mean 77.72
Min.
0
1st Qu.
0
Median
0
Mean
77.7162
3rd Qu.
3
Max.
3236
Std. dev
210.646
Skewness
3.11
Kurtosis
9.432
Zeros
77,710
Outliers
27,3090 low · 27309 high
Longest gap
309
Leading
39
Trailing
14
RevConStopsinteger1,12800 – 2133mean 6.729
Min.
0
1st Qu.
0
Median
0
Mean
6.7294
3rd Qu.
0
Max.
2133
Std. dev
61.0846
Skewness
11.82
Kurtosis
157.6
Zeros
2,244,482
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 2.5 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 1.5 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.