Houston_1_PreSaved_DataMapObj

`Assessment` Objects for *Bartonella henselae* strain Houston-1

Bundled with AssessORFData · exported, loads via data()

Class

Assessment

Assessment/DataMap

Elements

Missing

Format

rda · xz

version 2 · 2.6 MB

File

data/Houston_1_PreSaved_DataMapObj.rda

Fingerprint

1f68c73c

Format documented

Yes

Source

Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000153 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/BX897699.1

Structure

Distinct

Nesting depth

Element length

1 – 1,931,047

Total length

11,586,301

Elements

Element

Type

Distinct

Missing

Summary

StrainID

character

9 characters

Species

character

11 characters

GenomeLength

integer

1931047

StopsByFrame

list

numeric

Element class

numeric

Element length

32,919 – 34,694

Total length

204,802

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

numeric

34,577

823 – 1931005mean 9.246e+5

Min.

823

1st Qu.

456133

Median

905542

Mean

924645

3rd Qu.

1387372

Max.

1931005

Std. dev

554724

Skewness

0.0897

Kurtosis

-1.157

Order

ascending

[[2]]

numeric

32,919

2 – 1931039mean 9.332e+5

Min.

1st Qu.

464357

Median

919772

Mean

933211

3rd Qu.

1.40084e+6

Max.

1931039

Std. dev

552106

Skewness

0.0849

Kurtosis

-1.152

Order

ascending

[[3]]

numeric

34,587

42 – 1931028mean 9.279e+5

Min.

1st Qu.

443386

Median

902781

Mean

927852

3rd Qu.

1398540

Max.

1931028

Std. dev

555151

Skewness

0.1005

Kurtosis

-1.17

Order

ascending

[[4]]

numeric

33,394

19 – 1930840mean 9.592e+5

Min.

1st Qu.

482019

Median

947725

Mean

959169

3rd Qu.

1.4475e+6

Max.

1930840

Std. dev

556581

Skewness

0.0163

Kurtosis

-1.196

Order

ascending

[[5]]

numeric

34,631

8 – 1931018mean 9.568e+5

Min.

1st Qu.

497416

Median

943151

Mean

956827

3rd Qu.

1416362

Max.

1931018

Std. dev

544206

Skewness

0.0421

Kurtosis

-1.132

Order

ascending

[[6]]

numeric

34,694

36 – 1931022mean 9.608e+5

Min.

1st Qu.

495607

Median

952737

Mean

960780

3rd Qu.

1438098

Max.

1931022

Std. dev

553037

Skewness

0.0064

Kurtosis

-1.184

Order

ascending

NTermProteomics

logical

0 true·1 false

FwdProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

1,931,047 – 1,931,047

Total length

1,931,047

[[2]]

list

numeric

Element class

numeric

Element length

1,931,047 – 1,931,047

Total length

1,931,047

[[3]]

list

numeric

Element class

numeric

Element length

1,931,047 – 1,931,047

Total length

1,931,047

RevProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

1,931,047 – 1,931,047

Total length

1,931,047

[[2]]

list

numeric

Element class

numeric

Element length

1,931,047 – 1,931,047

Total length

1,931,047

[[3]]

list

numeric

Element class

numeric

Element length

1,931,047 – 1,931,047

Total length

1,931,047

FwdCoverage

integer

2,228

0 – 3802mean 156.2

Min.

1st Qu.

Median

Mean

156.175

3rd Qu.

125

Max.

3802

Std. dev

308.522

Skewness

2.05

Kurtosis

3.811

Zeros

1,147,527

Outliers

354,4880 low · 354488 high

FwdConStarts

integer

1,157

1,826,796

0 – 3099mean 63.07

Min.

1st Qu.

Median

Mean

63.0678

3rd Qu.

Max.

3099

Std. dev

178.883

Skewness

3.891

Kurtosis

18.1

Zeros

66,357

Outliers

21,2160 low · 21216 high

Longest gap

729

Trailing

FwdConStops

integer

1,091

0 – 3150mean 3.232

Min.

1st Qu.

Median

Mean

3.2319

3rd Qu.

Max.

3150

Std. dev

40.0408

Skewness

18.22

Kurtosis

418.1

Zeros

1,859,695

RevCoverage

numeric

2,228

0 – 3802mean 156.2

Min.

1st Qu.

Median

Mean

156.175

3rd Qu.

125

Max.

3802

Std. dev

308.522

Skewness

2.05

Kurtosis

3.811

Zeros

1,147,527

Outliers

354,4880 low · 354488 high

RevConStarts

integer

1,165

1,819,182

0 – 2805mean 57.73

Min.

1st Qu.

Median

Mean

57.7274

3rd Qu.

Max.

2805

Std. dev

175.297

Skewness

3.991

Kurtosis

17.41

Zeros

73,881

Outliers

23,0320 low · 23032 high

Longest gap

686

Leading

Trailing

RevConStops

integer

1,174

0 – 2006mean 3.672

Min.

1st Qu.

Median

Mean

3.6723

3rd Qu.

Max.

2006

Std. dev

44.3383

Skewness

16.8

Kurtosis

325.3

Zeros

1,855,405

NumRelatedGenomes

integer

1000

HasProteomics

logical

1 true·0 false

HasConservation

logical

1 true·0 false

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.22	2025-10-29	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.21	2025-04-15	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.20	2024-10-29	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.19	2024-04-30	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.18	2023-10-24	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.17	2023-04-25	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.16	2022-11-01	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.15	2022-04-26	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.14	2021-10-26	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.13	2021-05-19	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.12	2020-10-27	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.11	2020-04-27	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.10	2019-10-29	16 elements	Unchanged	rda · xz version 2 · 2.6 MB	exact
3.9	2019-05-02	16 elements	–	rda · xz version 2 · 2.6 MB	exact