H37Rv_PreSaved_ResultsObj_Prodigal
`Assessment` Objects for *Mycobacterium tuberculosis* strain H37Rv
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 19 KB
File
data/H37Rv_PreSaved_ResultsObj_Prodigal.rda
Fingerprint
97526f97
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006117 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/AL123456.3
Structure
Distinct
11
Element length
0 – 4,085
Total length
16,357
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
5 characters
Species
character
1
0
15 characters
GenomeLength
integer
1
0
4411532
GeneLeftPosnumeric4,08501 – 4408969mean 2.199e+6
Min.
1
1st Qu.
1094886
Median
2203681
Mean
2.19913e+6
3rd Qu.
3303103
Max.
4408969
Std. dev
1.26561e+6
Skewness
0.0062
Kurtosis
-1.196
Order
ascending
GeneRightPosnumeric4,08501524 – 4410069mean 2.2e+6
Min.
1524
1st Qu.
1095059
Median
2203977
Mean
2.20011e+6
3rd Qu.
3304248
Max.
4410069
Std. dev
1.26561e+6
Skewness
0.0063
Kurtosis
-1.196
Order
ascending
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
8 characters
NumGenes
integer
1
0
4085
N_CS-_PE+_ORFs
numeric
0
0
0 values
N_CS<_PE+_ORFsnumeric1100 – 3183395·2 × 6 matrixmean 9.025e+5
Min.
0
1st Qu.
1.75
Median
243.5
Mean
902476
3rd Qu.
2.23109e+6
Max.
3183395
Std. dev
1.36327e+6
Skewness
0.741
Kurtosis
-1.417
Zeros
2
CategoryAssignments
character
11
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 19 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 19 KB | exact |
| 3.8 | 2018-10-30 | 11 elements | – | rda · xz version 2 · 19 KB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.