H37Rv_PreSaved_DataMapObj
`Assessment` Objects for *Mycobacterium tuberculosis* strain H37Rv
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 8.0 MB
File
data/H37Rv_PreSaved_DataMapObj.rda
Fingerprint
01019afc
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006117 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/AL123456.3
Structure
Distinct
15
Nesting depth
3
Element length
1 – 4,411,532
Total length
26,469,211
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
5 characters
Species
character
1
0
15 characters
GenomeLength
integer
1
0
4411532
StopsByFramelist60numeric
Element class
numeric
Element length
27,126 – 28,261
Total length
165,591
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric27,68101522 – 4411354mean 2.184e+6
Min.
1522
1st Qu.
1081729
Median
2172652
Mean
2.18374e+6
3rd Qu.
3282262
Max.
4411354
Std. dev
1.27611e+6
Skewness
0.0195
Kurtosis
-1.193
Order
ascending
[[2]]numeric27,35702 – 4411508mean 2.19e+6
Min.
2
1st Qu.
1075310
Median
2170730
Mean
2.19018e+6
3rd Qu.
3312830
Max.
4411508
Std. dev
1.28548e+6
Skewness
0.0144
Kurtosis
-1.219
Order
ascending
[[3]]numeric28,26109 – 4411479mean 2.175e+6
Min.
9
1st Qu.
1073304
Median
2151771
Mean
2.17539e+6
3rd Qu.
3285639
Max.
4411479
Std. dev
1.27006e+6
Skewness
0.034
Kurtosis
-1.193
Order
ascending
[[4]]numeric27,5580163 – 4411405mean 2.187e+6
Min.
163
1st Qu.
1091914
Median
2.19778e+6
Mean
2.1867e+6
3rd Qu.
3.27869e+6
Max.
4411405
Std. dev
1.27049e+6
Skewness
0.0133
Kurtosis
-1.184
Order
ascending
[[5]]numeric27,1260242 – 4411505mean 2.186e+6
Min.
242
1st Qu.
1.06313e+6
Median
2.18963e+6
Mean
2.18618e+6
3rd Qu.
3.28698e+6
Max.
4411505
Std. dev
1.28015e+6
Skewness
0.0116
Kurtosis
-1.2
Order
ascending
[[6]]numeric27,608024 – 4411512mean 2.204e+6
Min.
24
1st Qu.
1112382
Median
2195847
Mean
2.204e+6
3rd Qu.
3.30878e+6
Max.
4411512
Std. dev
1.27635e+6
Skewness
0.0077
Kurtosis
-1.184
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
4,411,532 – 4,411,532
Total length
4,411,532
[[2]]list10numeric
Element class
numeric
Element length
4,411,532 – 4,411,532
Total length
4,411,532
[[3]]list10numeric
Element class
numeric
Element length
4,411,532 – 4,411,532
Total length
4,411,532
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
4,411,532 – 4,411,532
Total length
4,411,532
[[2]]list10numeric
Element class
numeric
Element length
4,411,532 – 4,411,532
Total length
4,411,532
[[3]]list10numeric
Element class
numeric
Element length
4,411,532 – 4,411,532
Total length
4,411,532
FwdCoverageinteger2,93900 – 3155mean 711.7
Min.
0
1st Qu.
408
Median
830
Mean
711.673
3rd Qu.
978
Max.
3155
Std. dev
290.822
Skewness
-0.0557
Kurtosis
-0.1783
Zeros
3
Outliers
4,3720 low · 4372 high
FwdConStartsinteger1,5134,218,0790 – 3103mean 544
Min.
0
1st Qu.
362
Median
423
Mean
543.986
3rd Qu.
771
Max.
3103
Std. dev
242.799
Skewness
0.835
Kurtosis
0.0523
Zeros
1
Outliers
2140 low · 214 high
Longest gap
441
Trailing
56
FwdConStopsinteger1,30100 – 2914mean 12.01
Min.
0
1st Qu.
0
Median
0
Mean
12.0088
3rd Qu.
0
Max.
2914
Std. dev
80.6655
Skewness
8.608
Kurtosis
83.62
Zeros
3,920,177
RevCoveragenumeric2,93900 – 3155mean 711.7
Min.
0
1st Qu.
408
Median
830
Mean
711.673
3rd Qu.
978
Max.
3155
Std. dev
290.822
Skewness
-0.0557
Kurtosis
-0.1783
Zeros
3
Outliers
4,3720 low · 4372 high
RevConStartsinteger1,5434,218,9040 – 2914mean 545.9
Min.
0
1st Qu.
362
Median
425
Mean
545.909
3rd Qu.
775
Max.
2914
Std. dev
245.574
Skewness
0.835
Kurtosis
0.1413
Zeros
8
Outliers
2260 low · 226 high
Longest gap
377
Leading
35
Trailing
28
RevConStopsinteger1,40400 – 2915mean 12.01
Min.
0
1st Qu.
0
Median
0
Mean
12.0074
3rd Qu.
0
Max.
2915
Std. dev
81.0301
Skewness
8.75
Kurtosis
87.89
Zeros
3,905,470
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 8.0 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 4.5 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.