EGD_e_PreSaved_ResultsObj_Prodigal
`Assessment` Objects for *Listeria monocytogenes* strain EGD-e
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 13 KB
File
data/EGD_e_PreSaved_ResultsObj_Prodigal.rda
Fingerprint
6a11ade4
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000890 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/NC_003210.1
Structure
Distinct
11
Element length
0 – 2,875
Total length
11,511
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
5 characters
Species
character
1
0
16 characters
GenomeLength
integer
1
0
2944528
GeneLeftPosnumeric2,8750318 – 2943871mean 1.482e+6
Min.
318
1st Qu.
747878
Median
1463506
Mean
1.4816e+6
3rd Qu.
2.2335e+6
Max.
2943871
Std. dev
848641
Skewness
-0.0003
Kurtosis
-1.211
Order
ascending
GeneRightPosnumeric2,87501673 – 2944341mean 1.483e+6
Min.
1673
1st Qu.
748862
Median
1464156
Mean
1.48251e+6
3rd Qu.
2.23397e+6
Max.
2944341
Std. dev
848632
Skewness
-0.0003
Kurtosis
-1.211
Order
ascending
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
8 characters
NumGenes
integer
1
0
2875
N_CS-_PE+_ORFs
numeric
0
0
0 values
N_CS<_PE+_ORFsnumeric600 – 263515·1 × 6 matrixmean 8.784e+4
Min.
0
1st Qu.
2.5
Median
78.5
Mean
87839.5
3rd Qu.
197560
Max.
263515
Std. dev
136019
Skewness
0.5379
Kurtosis
-1.958
Zeros
1
CategoryAssignments
character
11
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 13 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | – | rda · xz version 2 · 13 KB | exact |