D_UW_3_CX_PreSaved_DataMapObj
`Assessment` Objects for *Chlamydia trachomatis* strain D/UW-3/CX
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 1.8 MB
File
data/D_UW_3_CX_PreSaved_DataMapObj.rda
Fingerprint
9530f12e
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD003883 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/AE001273.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 1,042,519
Total length
6,255,133
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
9 characters
Species
character
1
0
14 characters
GenomeLength
integer
1
0
1042519
StopsByFramelist60numeric
Element class
numeric
Element length
17,333 – 17,993
Total length
105,378
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric17,50501174 – 1042510mean 5.31e+5
Min.
1174
1st Qu.
251428
Median
534097
Mean
531032
3rd Qu.
814948
Max.
1042510
Std. dev
311488
Skewness
-0.0288
Kurtosis
-1.285
Order
ascending
[[2]]numeric17,670080 – 1041887mean 5.16e+5
Min.
80
1st Qu.
249045
Median
510490
Mean
515954
3rd Qu.
780484
Max.
1041887
Std. dev
305377
Skewness
0.0395
Kurtosis
-1.235
Order
ascending
[[3]]numeric17,333021 – 1042485mean 5.203e+5
Min.
21
1st Qu.
249267
Median
523350
Mean
520292
3rd Qu.
797349
Max.
1042485
Std. dev
307838
Skewness
-0.0144
Kurtosis
-1.283
Order
ascending
[[4]]numeric17,505034 – 1042498mean 5.418e+5
Min.
34
1st Qu.
299485
Median
555604
Mean
541827
3rd Qu.
786019
Max.
1042498
Std. dev
292366
Skewness
-0.1158
Kurtosis
-1.116
Order
ascending
[[5]]numeric17,993038 – 1042469mean 5.292e+5
Min.
38
1st Qu.
282674
Median
544988
Mean
529248
3rd Qu.
777419
Max.
1042469
Std. dev
293243
Skewness
-0.069
Kurtosis
-1.139
Order
ascending
[[6]]numeric17,3720114 – 1042407mean 5.241e+5
Min.
114
1st Qu.
268336
Median
531920
Mean
524053
3rd Qu.
778327
Max.
1042407
Std. dev
297210
Skewness
-0.0315
Kurtosis
-1.161
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
1,042,519 – 1,042,519
Total length
1,042,519
[[2]]list10numeric
Element class
numeric
Element length
1,042,519 – 1,042,519
Total length
1,042,519
[[3]]list10numeric
Element class
numeric
Element length
1,042,519 – 1,042,519
Total length
1,042,519
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
1,042,519 – 1,042,519
Total length
1,042,519
[[2]]list10numeric
Element class
numeric
Element length
1,042,519 – 1,042,519
Total length
1,042,519
[[3]]list10numeric
Element class
numeric
Element length
1,042,519 – 1,042,519
Total length
1,042,519
FwdCoverageinteger37300 – 403mean 165.7
Min.
0
1st Qu.
88
Median
159
Mean
165.677
3rd Qu.
250
Max.
403
Std. dev
85.6931
Skewness
-0.0108
Kurtosis
-1.609
Zeros
6
FwdConStartsinteger324996,8930 – 358mean 103.2
Min.
0
1st Qu.
36
Median
86
Mean
103.152
3rd Qu.
152
Max.
358
Std. dev
77.9111
Skewness
0.9323
Kurtosis
-0.4502
Zeros
13
Outliers
30 low · 3 high
Longest gap
333
Leading
16
Trailing
20
FwdConStopsinteger31700 – 345mean 8.497
Min.
0
1st Qu.
0
Median
0
Mean
8.497
3rd Qu.
0
Max.
345
Std. dev
33.7815
Skewness
5.009
Kurtosis
27.05
Zeros
917,856
RevCoveragenumeric37300 – 403mean 165.7
Min.
0
1st Qu.
88
Median
159
Mean
165.677
3rd Qu.
250
Max.
403
Std. dev
85.6931
Skewness
-0.0108
Kurtosis
-1.609
Zeros
6
RevConStartsinteger320996,5990 – 342mean 103.1
Min.
0
1st Qu.
37
Median
86
Mean
103.107
3rd Qu.
154
Max.
342
Std. dev
77.5276
Skewness
0.9251
Kurtosis
-0.4647
Zeros
9
Outliers
20 low · 2 high
Longest gap
397
Leading
22
Trailing
35
RevConStopsinteger32200 – 356mean 8.662
Min.
0
1st Qu.
0
Median
0
Mean
8.662
3rd Qu.
0
Max.
356
Std. dev
34.0539
Skewness
4.969
Kurtosis
26.67
Zeros
911,862
NumRelatedGenomes
integer
1
0
305
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 1.8 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 1.0 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.