CNRZ327_PreSaved_DataMapObj
`Assessment` Objects for *Lactobacillus delbrueckii* subsp. *lactis* strain LBCNRZ327_V11
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 3.3 MB
File
data/CNRZ327_PreSaved_DataMapObj.rda
Fingerprint
801ac414
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006551 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CCDV01000001.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 2,105,434
Total length
12,632,623
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
7 characters
Species
character
1
0
21 characters
GenomeLength
integer
1
0
2105434
StopsByFramelist60numeric
Element class
numeric
Element length
25,870 – 26,765
Total length
158,557
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric26,318079 – 2105428mean 1.046e+6
Min.
79
1st Qu.
513804
Median
1061608
Mean
1.04564e+6
3rd Qu.
1.5719e+6
Max.
2105428
Std. dev
610010
Skewness
-0.0066
Kurtosis
-1.2
Order
ascending
[[2]]numeric26,638086 – 2105348mean 1.047e+6
Min.
86
1st Qu.
511443
Median
1.04569e+6
Mean
1.04668e+6
3rd Qu.
1.56826e+6
Max.
2105348
Std. dev
609249
Skewness
0.0198
Kurtosis
-1.194
Order
ascending
[[3]]numeric26,25209 – 2105394mean 1.043e+6
Min.
9
1st Qu.
531724
Median
1.03708e+6
Mean
1.04305e+6
3rd Qu.
1552419
Max.
2105394
Std. dev
602784
Skewness
0.0283
Kurtosis
-1.163
Order
ascending
[[4]]numeric26,714031 – 2105311mean 1.055e+6
Min.
31
1st Qu.
542784
Median
1.03359e+6
Mean
1.05484e+6
3rd Qu.
1.58591e+6
Max.
2105311
Std. dev
604736
Skewness
0.0024
Kurtosis
-1.175
Order
ascending
[[5]]numeric26,765011 – 2105339mean 1.043e+6
Min.
11
1st Qu.
527582
Median
1028528
Mean
1.04335e+6
3rd Qu.
1569086
Max.
2105339
Std. dev
606356
Skewness
0.0362
Kurtosis
-1.187
Order
ascending
[[6]]numeric25,870027 – 2105400mean 1.057e+6
Min.
27
1st Qu.
546506
Median
1054800
Mean
1.05669e+6
3rd Qu.
1575261
Max.
2105400
Std. dev
605710
Skewness
-0.0143
Kurtosis
-1.166
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
2,105,434 – 2,105,434
Total length
2,105,434
[[2]]list10numeric
Element class
numeric
Element length
2,105,434 – 2,105,434
Total length
2,105,434
[[3]]list10numeric
Element class
numeric
Element length
2,105,434 – 2,105,434
Total length
2,105,434
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
2,105,434 – 2,105,434
Total length
2,105,434
[[2]]list10numeric
Element class
numeric
Element length
2,105,434 – 2,105,434
Total length
2,105,434
[[3]]list10numeric
Element class
numeric
Element length
2,105,434 – 2,105,434
Total length
2,105,434
FwdCoverageinteger1,55000 – 1750mean 150.4
Min.
0
1st Qu.
0
Median
7
Mean
150.44
3rd Qu.
212
Max.
1750
Std. dev
256.549
Skewness
2.04
Kurtosis
3.525
Zeros
872,654
Outliers
203,4580 low · 203458 high
FwdConStartsinteger1,1252,016,5410 – 1560mean 93.78
Min.
0
1st Qu.
0
Median
3
Mean
93.782
3rd Qu.
91
Max.
1560
Std. dev
189.934
Skewness
2.822
Kurtosis
8.417
Zeros
37,870
Outliers
12,7290 low · 12729 high
Longest gap
10,060
Leading
7
Trailing
64
FwdConStopsinteger1,09500 – 1414mean 8.337
Min.
0
1st Qu.
0
Median
0
Mean
8.3371
3rd Qu.
0
Max.
1414
Std. dev
53.4079
Skewness
9.969
Kurtosis
124
Zeros
1,926,275
RevCoveragenumeric1,55000 – 1750mean 150.4
Min.
0
1st Qu.
0
Median
7
Mean
150.44
3rd Qu.
212
Max.
1750
Std. dev
256.549
Skewness
2.04
Kurtosis
3.525
Zeros
872,654
Outliers
203,4580 low · 203458 high
RevConStartsinteger1,1102,017,1300 – 1501mean 88.01
Min.
0
1st Qu.
0
Median
5
Mean
88.0084
3rd Qu.
95
Max.
1501
Std. dev
174.634
Skewness
3.007
Kurtosis
10.29
Zeros
35,737
Outliers
11,2050 low · 11205 high
Longest gap
10,127
Leading
17
Trailing
53
RevConStopsinteger1,11500 – 1492mean 8.688
Min.
0
1st Qu.
0
Median
0
Mean
8.6884
3rd Qu.
0
Max.
1492
Std. dev
53.5888
Skewness
9.851
Kurtosis
123.6
Zeros
1,908,092
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 1.7 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.