CECT5344_PreSaved_ResultsObj_GenBank
`Assessment` Objects for *Pseudomonas pseudoalcaligenes* strain CECT 5344
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 17 KB
File
data/CECT5344_PreSaved_ResultsObj_GenBank.rda
Fingerprint
0af67930
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD005745 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/HG916826.1
Structure
Distinct
11
Element length
0 – 4,431
Total length
17,735
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
8 characters
Species
character
1
0
20 characters
GenomeLength
integer
1
0
4686340
GeneLeftPosinteger4,4310384 – 4686069mean 2.359e+6
Min.
384
1st Qu.
1207859
Median
2388771
Mean
2.35875e+6
3rd Qu.
3.5196e+6
Max.
4686069
Std. dev
1.34291e+6
Skewness
-0.0319
Kurtosis
-1.182
Order
ascending
GeneRightPosinteger4,43101874 – 4686203mean 2.36e+6
Min.
1874
1st Qu.
1.20812e+6
Median
2389175
Mean
2.35967e+6
3rd Qu.
3.51991e+6
Max.
4686203
Std. dev
1.34289e+6
Skewness
-0.0318
Kurtosis
-1.182
Order
ascending
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
7 characters
NumGenes
integer
1
0
4431
N_CS-_PE+_ORFsnumeric600 – 4645127·1 × 6 matrixmean 1.548e+6
Min.
0
1st Qu.
5.25
Median
271.5
Mean
1.54838e+6
3rd Qu.
3.48358e+6
Max.
4645127
Std. dev
2.39852e+6
Skewness
0.5379
Kurtosis
-1.958
Zeros
1
N_CS<_PE+_ORFs
numeric
0
0
0 values
CategoryAssignments
character
11
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 17 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | – | rda · xz version 2 · 17 KB | exact |