CECT5344_PreSaved_DataMapObj
`Assessment` Objects for *Pseudomonas pseudoalcaligenes* strain CECT 5344
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 6.1 MB
File
data/CECT5344_PreSaved_DataMapObj.rda
Fingerprint
9abc358d
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD005745 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/HG916826.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 4,686,340
Total length
28,118,059
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
8 characters
Species
character
1
0
20 characters
GenomeLength
integer
1
0
4686340
StopsByFramelist60numeric
Element class
numeric
Element length
34,218 – 35,037
Total length
207,769
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric34,923028 – 4686313mean 2.326e+6
Min.
28
1st Qu.
1.16241e+6
Median
2278540
Mean
2.32633e+6
3rd Qu.
3487588
Max.
4686313
Std. dev
1.34567e+6
Skewness
0.0235
Kurtosis
-1.173
Order
ascending
[[2]]numeric34,4120371 – 4686323mean 2.357e+6
Min.
371
1st Qu.
1.20633e+6
Median
2346515
Mean
2.35673e+6
3rd Qu.
3.50797e+6
Max.
4686323
Std. dev
1.33984e+6
Skewness
0.002
Kurtosis
-1.174
Order
ascending
[[3]]numeric34,43103 – 4686267mean 2.343e+6
Min.
3
1st Qu.
1153242
Median
2310294
Mean
2.34332e+6
3rd Qu.
3514428
Max.
4686267
Std. dev
1.35645e+6
Skewness
0.012
Kurtosis
-1.193
Order
ascending
[[4]]numeric34,748034 – 4686337mean 2.278e+6
Min.
34
1st Qu.
1.13056e+6
Median
2.2535e+6
Mean
2.27752e+6
3rd Qu.
3.40928e+6
Max.
4686337
Std. dev
1.33756e+6
Skewness
0.0559
Kurtosis
-1.167
Order
ascending
[[5]]numeric35,0370113 – 4686323mean 2.273e+6
Min.
113
1st Qu.
1113089
Median
2242217
Mean
2.27292e+6
3rd Qu.
3394955
Max.
4686323
Std. dev
1.34434e+6
Skewness
0.0731
Kurtosis
-1.16
Order
ascending
[[6]]numeric34,218027 – 4686174mean 2.298e+6
Min.
27
1st Qu.
1.13391e+6
Median
2.27679e+6
Mean
2.29812e+6
3rd Qu.
3.47273e+6
Max.
4686174
Std. dev
1.35609e+6
Skewness
0.0515
Kurtosis
-1.198
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
4,686,340 – 4,686,340
Total length
4,686,340
[[2]]list10numeric
Element class
numeric
Element length
4,686,340 – 4,686,340
Total length
4,686,340
[[3]]list10numeric
Element class
numeric
Element length
4,686,340 – 4,686,340
Total length
4,686,340
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
4,686,340 – 4,686,340
Total length
4,686,340
[[2]]list10numeric
Element class
numeric
Element length
4,686,340 – 4,686,340
Total length
4,686,340
[[3]]list10numeric
Element class
numeric
Element length
4,686,340 – 4,686,340
Total length
4,686,340
FwdCoverageinteger2,67800 – 3172mean 494.3
Min.
0
1st Qu.
4
Median
426
Mean
494.274
3rd Qu.
978
Max.
3172
Std. dev
482.782
Skewness
0.1808
Kurtosis
-1.465
Zeros
705,198
Outliers
8010 low · 801 high
FwdConStartsinteger1,7034,484,1600 – 3159mean 268.8
Min.
0
1st Qu.
1
Median
13
Mean
268.769
3rd Qu.
850
Max.
3159
Std. dev
414.187
Skewness
1.122
Kurtosis
-0.4079
Zeros
49,073
Outliers
240 low · 24 high
Longest gap
447
Leading
17
Trailing
103
FwdConStopsinteger1,52300 – 3079mean 8.174
Min.
0
1st Qu.
0
Median
0
Mean
8.1737
3rd Qu.
0
Max.
3079
Std. dev
82.4112
Skewness
11.34
Kurtosis
132.4
Zeros
4,328,741
RevCoveragenumeric2,67800 – 3172mean 494.3
Min.
0
1st Qu.
4
Median
426
Mean
494.274
3rd Qu.
978
Max.
3172
Std. dev
482.782
Skewness
0.1808
Kurtosis
-1.465
Zeros
705,198
Outliers
8010 low · 801 high
RevConStartsinteger1,8194,482,8670 – 3169mean 269.4
Min.
0
1st Qu.
1
Median
12
Mean
269.382
3rd Qu.
852
Max.
3169
Std. dev
418.987
Skewness
1.168
Kurtosis
-0.1684
Zeros
49,056
Outliers
490 low · 49 high
Longest gap
326
Leading
38
Trailing
55
RevConStopsinteger1,60300 – 2780mean 8.301
Min.
0
1st Qu.
0
Median
0
Mean
8.3008
3rd Qu.
0
Max.
2780
Std. dev
83.4798
Skewness
11.38
Kurtosis
134.7
Zeros
4,316,299
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 6.1 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 3.2 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.