CCMP1375_PreSaved_DataMapObj
`Assessment` Objects for *Prochlorococcus marinus* subsp. *marinus* strain CCMP1375
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 3.5 MB
File
data/CCMP1375_PreSaved_DataMapObj.rda
Fingerprint
899fb353
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD005745 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/NC_005042.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 1,751,080
Total length
10,506,499
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
8 characters
Species
character
1
0
10 characters
GenomeLength
integer
1
0
1751080
StopsByFramelist60numeric
Element class
numeric
Element length
36,765 – 37,950
Total length
224,366
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric37,567025 – 1751035mean 8.584e+5
Min.
25
1st Qu.
439182
Median
855790
Mean
858428
3rd Qu.
1280863
Max.
1751035
Std. dev
496458
Skewness
0.0328
Kurtosis
-1.147
Order
ascending
[[2]]numeric37,950029 – 1751018mean 8.715e+5
Min.
29
1st Qu.
439992
Median
881180
Mean
871530
3rd Qu.
1.29095e+6
Max.
1751018
Std. dev
502046
Skewness
-0.0188
Kurtosis
-1.157
Order
ascending
[[3]]numeric36,76506 – 1751070mean 8.616e+5
Min.
6
1st Qu.
433686
Median
844665
Mean
861642
3rd Qu.
1292061
Max.
1751070
Std. dev
502108
Skewness
0.0566
Kurtosis
-1.16
Order
ascending
[[4]]numeric36,950010 – 1751074mean 8.73e+5
Min.
10
1st Qu.
441939
Median
876100
Mean
872977
3rd Qu.
1.30048e+6
Max.
1751074
Std. dev
501198
Skewness
0.0073
Kurtosis
-1.161
Order
ascending
[[5]]numeric37,347065 – 1751012mean 8.693e+5
Min.
65
1st Qu.
448895
Median
859367
Mean
869337
3rd Qu.
1.29397e+6
Max.
1751012
Std. dev
500232
Skewness
0.0362
Kurtosis
-1.163
Order
ascending
[[6]]numeric37,787024 – 1750998mean 8.673e+5
Min.
24
1st Qu.
440232
Median
864288
Mean
867324
3rd Qu.
1.28618e+6
Max.
1750998
Std. dev
499465
Skewness
0.0374
Kurtosis
-1.142
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
1,751,080 – 1,751,080
Total length
1,751,080
[[2]]list10numeric
Element class
numeric
Element length
1,751,080 – 1,751,080
Total length
1,751,080
[[3]]list10numeric
Element class
numeric
Element length
1,751,080 – 1,751,080
Total length
1,751,080
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
1,751,080 – 1,751,080
Total length
1,751,080
[[2]]list10numeric
Element class
numeric
Element length
1,751,080 – 1,751,080
Total length
1,751,080
[[3]]list10numeric
Element class
numeric
Element length
1,751,080 – 1,751,080
Total length
1,751,080
FwdCoverageinteger54000 – 593mean 81.36
Min.
0
1st Qu.
6
Median
26
Mean
81.356
3rd Qu.
149
Max.
593
Std. dev
93.7425
Skewness
0.9992
Kurtosis
-0.2611
Zeros
458
Outliers
1,6470 low · 1647 high
FwdConStartsinteger3571,664,4870 – 593mean 47.52
Min.
0
1st Qu.
4
Median
11
Mean
47.519
3rd Qu.
65
Max.
593
Std. dev
67.2847
Skewness
1.741
Kurtosis
2.345
Zeros
17
Outliers
8,4290 low · 8429 high
Longest gap
1,022
Leading
8
Trailing
35
FwdConStopsinteger33800 – 414mean 4.145
Min.
0
1st Qu.
0
Median
0
Mean
4.1446
3rd Qu.
0
Max.
414
Std. dev
20.6606
Skewness
6.82
Kurtosis
53.25
Zeros
1,494,154
RevCoveragenumeric54000 – 593mean 81.36
Min.
0
1st Qu.
6
Median
26
Mean
81.356
3rd Qu.
149
Max.
593
Std. dev
93.7425
Skewness
0.9992
Kurtosis
-0.2611
Zeros
458
Outliers
1,6470 low · 1647 high
RevConStartsinteger3561,664,3890 – 462mean 45.11
Min.
0
1st Qu.
4
Median
11
Mean
45.1058
3rd Qu.
60
Max.
462
Std. dev
64.2042
Skewness
1.815
Kurtosis
2.803
Zeros
9
Outliers
8,6430 low · 8643 high
Longest gap
1,029
Leading
14
Trailing
37
RevConStopsinteger35400 – 513mean 4.19
Min.
0
1st Qu.
0
Median
0
Mean
4.1902
3rd Qu.
0
Max.
513
Std. dev
20.7486
Skewness
6.927
Kurtosis
56.28
Zeros
1,482,083
NumRelatedGenomes
integer
1
0
361
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 3.5 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 1.8 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.