BW25113_PreSaved_DataMapObj

`Assessment` Objects for *Escherichia coli* strain BW25113

Bundled with AssessORFData · exported, loads via data()

Class

Assessment

Assessment/DataMap

Elements

Missing

Format

rda · xz

version 2 · 5.7 MB

File

data/BW25113_PreSaved_DataMapObj.rda

Fingerprint

e6364c37

Format documented

Yes

Source

Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000498 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/NZ_CP009273.1

Structure

Distinct

Nesting depth

Element length

1 – 4,631,469

Total length

27,788,833

Elements

Element

Type

Distinct

Missing

Summary

StrainID

character

7 characters

Species

character

7 characters

GenomeLength

integer

4631469

StopsByFrame

list

numeric

Element class

numeric

Element length

59,207 – 60,706

Total length

358,699

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

numeric

59,325

13 – 4631458mean 2.316e+6

Min.

1st Qu.

1191343

Median

2294629

Mean

2.31619e+6

3rd Qu.

3487087

Max.

4631458

Std. dev

1.32851e+6

Skewness

0.0082

Kurtosis

-1.193

Order

ascending

[[2]]

numeric

60,286

74 – 4631378mean 2.305e+6

Min.

1st Qu.

1.13628e+6

Median

2.27234e+6

Mean

2.30529e+6

3rd Qu.

3483305

Max.

4631378

Std. dev

1.34791e+6

Skewness

0.0304

Kurtosis

-1.216

Order

ascending

[[3]]

numeric

59,704

96 – 4631424mean 2.278e+6

Min.

1st Qu.

1.11603e+6

Median

2214684

Mean

2.27778e+6

3rd Qu.

3.45206e+6

Max.

4631424

Std. dev

1.35045e+6

Skewness

0.0645

Kurtosis

-1.214

Order

ascending

[[4]]

numeric

59,471

91 – 4631461mean 2.294e+6

Min.

1st Qu.

1182862

Median

2306890

Mean

2.29358e+6

3rd Qu.

3391393

Max.

4631461

Std. dev

1.3035e+6

Skewness

0.0172

Kurtosis

-1.153

Order

ascending

[[5]]

numeric

59,207

14 – 4631423mean 2.322e+6

Min.

1st Qu.

1.1931e+6

Median

2319707

Mean

2.32247e+6

3rd Qu.

3442751

Max.

4631423

Std. dev

1.32033e+6

Skewness

-0.0012

Kurtosis

-1.176

Order

ascending

[[6]]

numeric

60,706

33 – 4631352mean 2.307e+6

Min.

1st Qu.

1.18358e+6

Median

2.3162e+6

Mean

2.30745e+6

3rd Qu.

3418299

Max.

4631352

Std. dev

1.31762e+6

Skewness

-0.0113

Kurtosis

-1.156

Order

ascending

NTermProteomics

logical

0 true·1 false

FwdProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

4,631,469 – 4,631,469

Total length

4,631,469

[[2]]

list

numeric

Element class

numeric

Element length

4,631,469 – 4,631,469

Total length

4,631,469

[[3]]

list

numeric

Element class

numeric

Element length

4,631,469 – 4,631,469

Total length

4,631,469

RevProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

4,631,469 – 4,631,469

Total length

4,631,469

[[2]]

list

numeric

Element class

numeric

Element length

4,631,469 – 4,631,469

Total length

4,631,469

[[3]]

list

numeric

Element class

numeric

Element length

4,631,469 – 4,631,469

Total length

4,631,469

FwdCoverage

integer

2,293

0 – 2384mean 873.7

Min.

1st Qu.

904

Median

973

Mean

873.704

3rd Qu.

981

Max.

2384

Std. dev

227.752

Skewness

-2.024

Kurtosis

4.871

Zeros

Outliers

903,000863321 low · 39679 high

FwdConStarts

integer

1,624

4,412,514

0 – 2374mean 808.5

Min.

1st Qu.

734

Median

920

Mean

808.5

3rd Qu.

971

Max.

2374

Std. dev

252.281

Skewness

-1.548

Kurtosis

2.168

Zeros

Outliers

20,20919763 low · 446 high

Longest gap

428

Leading

Trailing

FwdConStops

integer

1,540

0 – 2374mean 33.14

Min.

1st Qu.

Median

Mean

33.1393

3rd Qu.

Max.

2374

Std. dev

164.71

Skewness

5.154

Kurtosis

25.44

Zeros

4,201,765

RevCoverage

integer

2,293

0 – 2384mean 873.7

Min.

1st Qu.

904

Median

973

Mean

873.704

3rd Qu.

981

Max.

2384

Std. dev

227.752

Skewness

-2.024

Kurtosis

4.871

Zeros

Outliers

903,000863321 low · 39679 high

RevConStarts

integer

1,521

4,411,557

2 – 2361mean 811

Min.

1st Qu.

745

Median

920

Mean

811.045

3rd Qu.

971

Max.

2361

Std. dev

248.32

Skewness

-1.631

Kurtosis

2.252

Outliers

21,04920732 low · 317 high

Longest gap

340

Leading

Trailing

RevConStops

integer

1,517

0 – 2331mean 33.3

Min.

1st Qu.

Median

Mean

33.3022

3rd Qu.

Max.

2331

Std. dev

165.101

Skewness

5.138

Kurtosis

25.24

Zeros

4,196,530

NumRelatedGenomes

integer

1000

HasProteomics

logical

1 true·0 false

HasConservation

logical

1 true·0 false

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.22	2025-10-29	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.21	2025-04-15	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.20	2024-10-29	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.19	2024-04-30	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.18	2023-10-24	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.17	2023-04-25	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.16	2022-11-01	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.15	2022-04-26	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.14	2021-10-26	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.13	2021-05-19	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.12	2020-10-27	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.11	2020-04-27	16 elements	Unchanged	rda · xz version 2 · 5.7 MB	exact
3.10	2019-10-29	16 elements	–	rda · xz version 2 · 5.7 MB	exact