ATCC700084_PreSaved_ResultsObj_GenBank
`Assessment` Objects for *Mycobacterium smegmatis* strain ATCC 700084
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 2 · 26 KB
File
data/ATCC700084_PreSaved_ResultsObj_GenBank.rda
Fingerprint
d17d59a6
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD003500 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/NC_008596.1
Structure
Distinct
11
Element length
1 – 6,717
Total length
26,939
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
10 characters
Species
character
1
0
12 characters
GenomeLength
integer
1
0
6988209
GeneLeftPosinteger6,7170499 – 6986600mean 3.547e+6
Min.
499
1st Qu.
1823395
Median
3543755
Mean
3.54686e+6
3rd Qu.
5311646
Max.
6986600
Std. dev
2.00839e+6
Skewness
-0.0164
Kurtosis
-1.204
Order
ascending
GeneRightPosinteger6,71701692 – 6988114mean 3.548e+6
Min.
1692
1st Qu.
1824546
Median
3544417
Mean
3.54781e+6
3rd Qu.
5312170
Max.
6988114
Std. dev
2.00836e+6
Skewness
-0.0164
Kurtosis
-1.204
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
7 characters
NumGenes
integer
1
0
6717
N_CS-_PE+_ORFsnumeric3400 – 6601635·8 × 6 matrixmean 1.463e+6
Min.
0
1st Qu.
5
Median
378
Mean
1.46346e+6
3rd Qu.
2242826
Max.
6601635
Std. dev
2.39146e+6
Skewness
1.264
Kurtosis
-0.0708
Zeros
5
Outliers
80 low · 8 high
N_CS<_PE+_ORFsnumeric1500 – 4716043·3 × 6 matrixmean 1.188e+6
Min.
0
1st Qu.
5.25
Median
305.5
Mean
1.18825e+6
3rd Qu.
2.16213e+6
Max.
4716043
Std. dev
1.83937e+6
Skewness
0.944
Kurtosis
-0.9108
Zeros
1
CategoryAssignments
character
12
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | Unchanged | rda · xz version 2 · 26 KB | exact |
| 3.9 | 2019-05-02 | 11 elements | – | rda · xz version 2 · 26 KB | exact |