ATCC700084_PreSaved_DataMapObj
`Assessment` Objects for *Mycobacterium smegmatis* strain ATCC 700084
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 3.8 MB
File
data/ATCC700084_PreSaved_DataMapObj.rda
Fingerprint
830c8a35
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD003500 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/NC_008596.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 6,988,209
Total length
41,929,273
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
10 characters
Species
character
1
0
12 characters
GenomeLength
integer
1
0
6988209
StopsByFramelist60numeric
Element class
numeric
Element length
35,078 – 37,318
Total length
216,743
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric36,585097 – 6988204mean 3.496e+6
Min.
97
1st Qu.
1754749
Median
3512824
Mean
3.49589e+6
3rd Qu.
5241268
Max.
6988204
Std. dev
2.00793e+6
Skewness
-0.0044
Kurtosis
-1.206
Order
ascending
[[2]]numeric35,817011 – 6988112mean 3.499e+6
Min.
11
1st Qu.
1758875
Median
3524735
Mean
3.49933e+6
3rd Qu.
5227988
Max.
6988112
Std. dev
2.01033e+6
Skewness
-0.0045
Kurtosis
-1.209
Order
ascending
[[3]]numeric35,0780459 – 6988008mean 3.482e+6
Min.
459
1st Qu.
1694934
Median
3510705
Mean
3.48207e+6
3rd Qu.
5240217
Max.
6988008
Std. dev
2.03283e+6
Skewness
-0.0104
Kurtosis
-1.205
Order
ascending
[[4]]numeric37,3180229 – 6988108mean 3.489e+6
Min.
229
1st Qu.
1.70644e+6
Median
3.48304e+6
Mean
3.48911e+6
3rd Qu.
5.28595e+6
Max.
6988108
Std. dev
2.02513e+6
Skewness
0.0028
Kurtosis
-1.217
Order
ascending
[[5]]numeric35,806083 – 6988184mean 3.506e+6
Min.
83
1st Qu.
1.75181e+6
Median
3484490
Mean
3.50602e+6
3rd Qu.
5.27261e+6
Max.
6988184
Std. dev
2.03113e+6
Skewness
0.0015
Kurtosis
-1.191
Order
ascending
[[6]]numeric36,139039 – 6988059mean 3.516e+6
Min.
39
1st Qu.
1.76786e+6
Median
3525915
Mean
3.51638e+6
3rd Qu.
5280126
Max.
6988059
Std. dev
2.01653e+6
Skewness
-0.0213
Kurtosis
-1.21
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
6,988,209 – 6,988,209
Total length
6,988,209
[[2]]list10numeric
Element class
numeric
Element length
6,988,209 – 6,988,209
Total length
6,988,209
[[3]]list10numeric
Element class
numeric
Element length
6,988,209 – 6,988,209
Total length
6,988,209
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
6,988,209 – 6,988,209
Total length
6,988,209
[[2]]list10numeric
Element class
numeric
Element length
6,988,209 – 6,988,209
Total length
6,988,209
[[3]]list10numeric
Element class
numeric
Element length
6,988,209 – 6,988,209
Total length
6,988,209
FwdCoverageinteger2,33200 – 3193mean 270
Min.
0
1st Qu.
0
Median
0
Mean
270.015
3rd Qu.
961
Max.
3193
Std. dev
440.618
Skewness
1.116
Kurtosis
-0.4165
Zeros
3,921,232
Outliers
3,3010 low · 3301 high
FwdConStartsinteger1,2936,701,1680 – 3187mean 142.2
Min.
0
1st Qu.
0
Median
0
Mean
142.182
3rd Qu.
2
Max.
3187
Std. dev
343.935
Skewness
2.088
Kurtosis
2.599
Zeros
200,589
Outliers
64,5370 low · 64537 high
Longest gap
480
Leading
7
Trailing
71
FwdConStopsinteger1,21100 – 2626mean 4.661
Min.
0
1st Qu.
0
Median
0
Mean
4.6606
3rd Qu.
0
Max.
2626
Std. dev
66.5512
Skewness
14.62
Kurtosis
214.8
Zeros
6,871,431
RevCoveragenumeric2,33200 – 3193mean 270
Min.
0
1st Qu.
0
Median
0
Mean
270.015
3rd Qu.
961
Max.
3193
Std. dev
440.618
Skewness
1.116
Kurtosis
-0.4165
Zeros
3,921,232
Outliers
3,3010 low · 3301 high
RevConStartsinteger1,3696,698,6700 – 3190mean 148.8
Min.
0
1st Qu.
0
Median
0
Mean
148.801
3rd Qu.
3
Max.
3190
Std. dev
351.082
Skewness
2.031
Kurtosis
2.445
Zeros
199,491
Outliers
63,0330 low · 63033 high
Longest gap
476
Leading
48
Trailing
16
RevConStopsinteger1,28000 – 3191mean 4.863
Min.
0
1st Qu.
0
Median
0
Mean
4.8629
3rd Qu.
0
Max.
3191
Std. dev
68.0606
Skewness
14.4
Kurtosis
210.8
Zeros
6,866,826
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 3.8 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 2.4 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.