ATCC17978_PreSaved_DataMapObj
`Assessment` Objects for *Acinetobacter baumannii* strain ATCC 17978
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 8.7 MB
File
data/ATCC17978_PreSaved_DataMapObj.rda
Fingerprint
e3195faa
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD012539 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CP000521.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 3,976,747
Total length
23,860,501
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
9 characters
Species
character
1
0
12 characters
GenomeLength
integer
1
0
3976747
StopsByFramelist60numeric
Element class
numeric
Element length
77,626 – 78,426
Total length
468,126
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric78,42607 – 3976726mean 1.981e+6
Min.
7
1st Qu.
1.01261e+6
Median
1.98553e+6
Mean
1.98139e+6
3rd Qu.
2946484
Max.
3976726
Std. dev
1.13182e+6
Skewness
0.0042
Kurtosis
-1.165
Order
ascending
[[2]]numeric77,755059 – 3976655mean 1.96e+6
Min.
59
1st Qu.
962836
Median
1925228
Mean
1.95997e+6
3rd Qu.
2960567
Max.
3976655
Std. dev
1.14817e+6
Skewness
0.0332
Kurtosis
-1.197
Order
ascending
[[3]]numeric77,626048 – 3976734mean 1.962e+6
Min.
48
1st Qu.
982923
Median
1.95005e+6
Mean
1.96243e+6
3rd Qu.
2.94263e+6
Max.
3976734
Std. dev
1.13804e+6
Skewness
0.0242
Kurtosis
-1.175
Order
ascending
[[4]]numeric78,012046 – 3976699mean 1.965e+6
Min.
46
1st Qu.
1004104
Median
1.92834e+6
Mean
1.9654e+6
3rd Qu.
2.94163e+6
Max.
3976699
Std. dev
1.13149e+6
Skewness
0.0502
Kurtosis
-1.171
Order
ascending
[[5]]numeric78,336071 – 3976712mean 1.966e+6
Min.
71
1st Qu.
971203
Median
1956791
Mean
1.96563e+6
3rd Qu.
2.95899e+6
Max.
3976712
Std. dev
1.14862e+6
Skewness
0.0228
Kurtosis
-1.196
Order
ascending
[[6]]numeric77,971039 – 3976692mean 1.939e+6
Min.
39
1st Qu.
965684
Median
1906755
Mean
1.93868e+6
3rd Qu.
2.90851e+6
Max.
3976692
Std. dev
1.13904e+6
Skewness
0.059
Kurtosis
-1.175
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
3,976,747 – 3,976,747
Total length
3,976,747
[[2]]list10numeric
Element class
numeric
Element length
3,976,747 – 3,976,747
Total length
3,976,747
[[3]]list10numeric
Element class
numeric
Element length
3,976,747 – 3,976,747
Total length
3,976,747
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
3,976,747 – 3,976,747
Total length
3,976,747
[[2]]list10numeric
Element class
numeric
Element length
3,976,747 – 3,976,747
Total length
3,976,747
[[3]]list10numeric
Element class
numeric
Element length
3,976,747 – 3,976,747
Total length
3,976,747
FwdCoverageinteger1,63200 – 1687mean 656.8
Min.
0
1st Qu.
496
Median
686
Mean
656.823
3rd Qu.
961
Max.
1687
Std. dev
308.686
Skewness
-0.6473
Kurtosis
-0.5119
Zeros
273
Outliers
510 low · 51 high
FwdConStartsinteger1,3443,756,5130 – 1588mean 525.1
Min.
0
1st Qu.
336
Median
557
Mean
525.073
3rd Qu.
721
Max.
1588
Std. dev
276.065
Skewness
-0.1965
Kurtosis
-0.6845
Zeros
24
Outliers
1240 low · 124 high
Longest gap
296
Leading
1
Trailing
14
FwdConStopsinteger1,28700 – 1588mean 36.42
Min.
0
1st Qu.
0
Median
0
Mean
36.4228
3rd Qu.
0
Max.
1588
Std. dev
139.197
Skewness
4.465
Kurtosis
20.41
Zeros
3,259,579
RevCoveragenumeric1,63200 – 1687mean 656.8
Min.
0
1st Qu.
496
Median
686
Mean
656.823
3rd Qu.
961
Max.
1687
Std. dev
308.686
Skewness
-0.6473
Kurtosis
-0.5119
Zeros
273
Outliers
510 low · 51 high
RevConStartsinteger1,2553,759,1850 – 1644mean 525
Min.
0
1st Qu.
339
Median
557
Mean
525.013
3rd Qu.
717
Max.
1644
Std. dev
272.127
Skewness
-0.2073
Kurtosis
-0.6736
Zeros
17
Outliers
650 low · 65 high
Longest gap
316
Leading
1
Trailing
36
RevConStopsinteger1,27900 – 1687mean 36.59
Min.
0
1st Qu.
0
Median
0
Mean
36.5853
3rd Qu.
0
Max.
1687
Std. dev
139.258
Skewness
4.457
Kurtosis
20.35
Zeros
3,242,071
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 8.7 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 5.3 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.