ATCC11842_PreSaved_DataMapObj
`Assessment` Objects for *Lactobacillus delbrueckii* subsp. *bulgaricus* strain ATCC 11842
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/DataMap
Elements
16
Missing
0
Format
rda · xz
version 2 · 3.3 MB
File
data/ATCC11842_PreSaved_DataMapObj.rda
Fingerprint
c4660296
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006551 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/NC_008054.1
Structure
Distinct
15
Nesting depth
3
Element length
1 – 1,864,998
Total length
11,190,007
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
9 characters
Species
character
1
0
25 characters
GenomeLength
integer
1
0
1864998
StopsByFramelist60numeric
Element class
numeric
Element length
25,163 – 26,108
Total length
153,410
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]numeric25,1630175 – 1864897mean 9.286e+5
Min.
175
1st Qu.
450358
Median
927640
Mean
928642
3rd Qu.
1414027
Max.
1864897
Std. dev
541728
Skewness
0.0222
Kurtosis
-1.21
Order
ascending
[[2]]numeric25,3440275 – 1864970mean 9.539e+5
Min.
275
1st Qu.
487582
Median
964313
Mean
953943
3rd Qu.
1430183
Max.
1864970
Std. dev
543972
Skewness
-0.0563
Kurtosis
-1.202
Order
ascending
[[3]]numeric25,6010132 – 1864995mean 9.315e+5
Min.
132
1st Qu.
457698
Median
932784
Mean
931456
3rd Qu.
1403673
Max.
1864995
Std. dev
540568
Skewness
-0.0157
Kurtosis
-1.199
Order
ascending
[[4]]numeric25,481043 – 1864843mean 9.045e+5
Min.
43
1st Qu.
419287
Median
889801
Mean
904494
3rd Qu.
1381300
Max.
1864843
Std. dev
541526
Skewness
0.0533
Kurtosis
-1.213
Order
ascending
[[5]]numeric25,7130110 – 1864868mean 9.2e+5
Min.
110
1st Qu.
443051
Median
906350
Mean
920030
3rd Qu.
1397519
Max.
1864868
Std. dev
540506
Skewness
0.0242
Kurtosis
-1.201
Order
ascending
[[6]]numeric26,1080126 – 1864971mean 8.895e+5
Min.
126
1st Qu.
419310
Median
861966
Mean
889494
3rd Qu.
1.34423e+6
Max.
1864971
Std. dev
540379
Skewness
0.1146
Kurtosis
-1.186
Order
ascending
NTermProteomics
logical
1
0
0 true·1 false
FwdProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
1,864,998 – 1,864,998
Total length
1,864,998
[[2]]list10numeric
Element class
numeric
Element length
1,864,998 – 1,864,998
Total length
1,864,998
[[3]]list10numeric
Element class
numeric
Element length
1,864,998 – 1,864,998
Total length
1,864,998
RevProtHitslist30list
Element class
list
Element length
1 – 1
Total length
3
Nesting depth
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]list10numeric
Element class
numeric
Element length
1,864,998 – 1,864,998
Total length
1,864,998
[[2]]list10numeric
Element class
numeric
Element length
1,864,998 – 1,864,998
Total length
1,864,998
[[3]]list10numeric
Element class
numeric
Element length
1,864,998 – 1,864,998
Total length
1,864,998
FwdCoverageinteger1,51800 – 1753mean 169.8
Min.
0
1st Qu.
0
Median
25
Mean
169.814
3rd Qu.
254
Max.
1753
Std. dev
263.141
Skewness
1.86
Kurtosis
2.793
Zeros
632,495
Outliers
156,5560 low · 156556 high
FwdConStartsinteger1,1121,779,8910 – 1556mean 98.47
Min.
0
1st Qu.
0
Median
6
Mean
98.4686
3rd Qu.
108
Max.
1556
Std. dev
189.924
Skewness
2.728
Kurtosis
7.913
Zeros
33,828
Outliers
10,7750 low · 10775 high
Longest gap
285
Leading
38
Trailing
15
FwdConStopsinteger1,08100 – 1416mean 9.443
Min.
0
1st Qu.
0
Median
0
Mean
9.4427
3rd Qu.
0
Max.
1416
Std. dev
56.3047
Skewness
9.273
Kurtosis
107.5
Zeros
1,684,786
RevCoveragenumeric1,51800 – 1753mean 169.8
Min.
0
1st Qu.
0
Median
25
Mean
169.814
3rd Qu.
254
Max.
1753
Std. dev
263.141
Skewness
1.86
Kurtosis
2.793
Zeros
632,495
Outliers
156,5560 low · 156556 high
RevConStartsinteger1,1021,778,9040 – 1533mean 90.86
Min.
0
1st Qu.
0
Median
7
Mean
90.8636
3rd Qu.
108
Max.
1533
Std. dev
172.51
Skewness
2.914
Kurtosis
9.846
Zeros
33,139
Outliers
9,7320 low · 9732 high
Longest gap
804
Leading
28
Trailing
24
RevConStopsinteger1,10100 – 1380mean 9.847
Min.
0
1st Qu.
0
Median
0
Mean
9.8468
3rd Qu.
0
Max.
1380
Std. dev
56.2776
Skewness
9.098
Kurtosis
105.7
Zeros
1,665,653
NumRelatedGenomes
integer
1
0
1000
HasProteomics
logical
1
0
1 true·0 false
HasConservation
logical
1
0
1 true·0 false
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.22 | 2025-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.21 | 2025-04-15 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.20 | 2024-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.19 | 2024-04-30 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.18 | 2023-10-24 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.17 | 2023-04-25 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.16 | 2022-11-01 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.15 | 2022-04-26 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.14 | 2021-10-26 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.13 | 2021-05-19 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.12 | 2020-10-27 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.11 | 2020-04-27 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.10 | 2019-10-29 | 16 elements | Unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.9 | 2019-05-02 | 16 elements | Data changed Class, Type, Missing and Distinct unchanged | rda · xz version 2 · 3.3 MB | exact |
| 3.8 | 2018-10-30 | 16 elements | – | rda · xz version 2 · 1.6 MB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.