AP1_PreSaved_ResultsObj_GenBank
`Assessment` Objects for *Streptococcus pyogenes* strain AP1
Bundled with AssessORFData · exported, loads via data()
Class
Assessment
Assessment/Results
Elements
11
Missing
0
Format
rda · xz
version 3 · 7.7 KB
File
data/AP1_PreSaved_ResultsObj_GenBank.rda
Fingerprint
d3e0124d
Format documented
Yes
Source
Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006345 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CP007537.1
Structure
Distinct
11
Element length
0 – 1,836
Total length
7,355
Elements
Element
Type
Distinct
Missing
Summary
StrainID
character
1
0
3 characters
Species
character
1
0
11 characters
GenomeLength
integer
1
0
1908294
GeneLeftPosinteger1,8360232 – 1907517mean 9.533e+5
Min.
232
1st Qu.
510654
Median
953828
Mean
953339
3rd Qu.
1.40786e+6
Max.
1907517
Std. dev
535335
Skewness
-0.0032
Kurtosis
-1.146
Order
ascending
GeneRightPosinteger1,83601587 – 1908293mean 9.542e+5
Min.
1587
1st Qu.
511191
Median
954160
Mean
954223
3rd Qu.
1.40843e+6
Max.
1908293
Std. dev
535340
Skewness
-0.003
Kurtosis
-1.146
Order
ascending
GeneStrand
character
2
0
1 characters
GeneSource
character
1
0
7 characters
NumGenes
integer
1
0
1836
N_CS-_PE+_ORFsnumeric600 – 1732911·1 × 6 matrixmean 5.776e+5
Min.
0
1st Qu.
1.25
Median
38.5
Mean
577638
3rd Qu.
1.29965e+6
Max.
1732911
Std. dev
894842
Skewness
0.5379
Kurtosis
-1.958
Zeros
1
N_CS<_PE+_ORFs
numeric
0
0
0 values
CategoryAssignments
character
12
0
9 characters
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.20 | 2024-10-29 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.19 | 2024-04-30 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.16 | 2022-11-01 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.15 | 2022-04-26 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.14 | 2021-10-26 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.13 | 2021-05-19 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.12 | 2020-10-27 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.11 | 2020-04-27 | 11 elements | Unchanged | rda · xz version 3 · 7.7 KB | exact |
| 3.10 | 2019-10-29 | 11 elements | – | rda · xz version 3 · 7.7 KB | exact |