AP1_PreSaved_DataMapObj

`Assessment` Objects for *Streptococcus pyogenes* strain AP1

Bundled with AssessORFData · exported, loads via data()

Class

Assessment

Assessment/DataMap

Elements

Missing

Format

rda · xz

version 3 · 3.8 MB

File

data/AP1_PreSaved_DataMapObj.rda

Fingerprint

a17aada7

Format documented

Yes

Source

Proteomcis data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006345 NCBI's Genome Browser: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/ GenBank record: https://www.ncbi.nlm.nih.gov/nuccore/CP007537.1

Structure

Distinct

Nesting depth

Element length

1 – 1,908,294

Total length

11,449,783

Elements

Element

Type

Distinct

Missing

Summary

StrainID

character

3 characters

Species

character

11 characters

GenomeLength

integer

1908294

StopsByFrame

list

numeric

Element class

numeric

Element length

38,549 – 40,291

Total length

236,349

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

numeric

40,191

46 – 1908286mean 9.434e+5

Min.

1st Qu.

472792

Median

940090

Mean

943394

3rd Qu.

1.40871e+6

Max.

1908286

Std. dev

544850

Skewness

0.0268

Kurtosis

-1.177

Order

ascending

[[2]]

numeric

38,549

5 – 1908260mean 9.631e+5

Min.

1st Qu.

482993

Median

980762

Mean

963140

3rd Qu.

1436750

Max.

1908260

Std. dev

552812

Skewness

-0.0428

Kurtosis

-1.199

Order

ascending

[[3]]

numeric

39,469

27 – 1908291mean 9.552e+5

Min.

1st Qu.

491889

Median

948090

Mean

955207

3rd Qu.

1422801

Max.

1908291

Std. dev

547950

Skewness

0.0053

Kurtosis

-1.161

Order

ascending

[[4]]

numeric

38,617

16 – 1908184mean 9.489e+5

Min.

1st Qu.

474751

Median

953059

Mean

948855

3rd Qu.

1429015

Max.

1908184

Std. dev

552483

Skewness

0.0027

Kurtosis

-1.198

Order

ascending

[[5]]

numeric

40,291

8 – 1908221mean 9.405e+5

Min.

1st Qu.

470266

Median

932081

Mean

940451

3rd Qu.

1.41195e+6

Max.

1908221

Std. dev

544890

Skewness

0.0349

Kurtosis

-1.181

Order

ascending

[[6]]

numeric

39,232

57 – 1908267mean 9.451e+5

Min.

1st Qu.

473041

Median

939164

Mean

945074

3rd Qu.

1.40767e+6

Max.

1908267

Std. dev

547862

Skewness

0.0199

Kurtosis

-1.163

Order

ascending

NTermProteomics

logical

0 true·1 false

FwdProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

1,908,294 – 1,908,294

Total length

1,908,294

[[2]]

list

numeric

Element class

numeric

Element length

1,908,294 – 1,908,294

Total length

1,908,294

[[3]]

list

numeric

Element class

numeric

Element length

1,908,294 – 1,908,294

Total length

1,908,294

RevProtHits

list

Element class

list

Element length

1 – 1

Total length

Nesting depth

What is inside it

Element

Type

Distinct

Missing

Summary

[[1]]

list

numeric

Element class

numeric

Element length

1,908,294 – 1,908,294

Total length

1,908,294

[[2]]

list

numeric

Element class

numeric

Element length

1,908,294 – 1,908,294

Total length

1,908,294

[[3]]

list

numeric

Element class

numeric

Element length

1,908,294 – 1,908,294

Total length

1,908,294

FwdCoverage

integer

1,690

0 – 1757mean 373.6

Min.

1st Qu.

Median

244

Mean

373.592

3rd Qu.

721

Max.

1757

Std. dev

366.316

Skewness

0.5871

Kurtosis

-1.113

Zeros

268,288

FwdConStarts

integer

1,162

1,807,628

0 – 1622mean 227.9

Min.

1st Qu.

Median

Mean

227.918

3rd Qu.

357

Max.

1622

Std. dev

289.883

Skewness

1.239

Kurtosis

0.477

Zeros

23,442

Outliers

4,6370 low · 4637 high

Longest gap

265

Trailing

FwdConStops

integer

1,123

0 – 1611mean 19.37

Min.

1st Qu.

Median

Mean

19.3666

3rd Qu.

Max.

1611

Std. dev

92.7964

Skewness

6.441

Kurtosis

47.92

Zeros

1,653,503

RevCoverage

integer

1,690

0 – 1757mean 373.6

Min.

1st Qu.

Median

244

Mean

373.592

3rd Qu.

721

Max.

1757

Std. dev

366.316

Skewness

0.5871

Kurtosis

-1.113

Zeros

268,288

RevConStarts

integer

1,113

1,808,786

0 – 1631mean 220.9

Min.

1st Qu.

Median

Mean

220.853

3rd Qu.

343

Max.

1631

Std. dev

281.652

Skewness

1.269

Kurtosis

0.6012

Zeros

22,430

Outliers

4,5860 low · 4586 high

Longest gap

261

Leading

Trailing

RevConStops

integer

1,142

0 – 1635mean 19.37

Min.

1st Qu.

Median

Mean

19.3699

3rd Qu.

Max.

1635

Std. dev

92.3509

Skewness

6.441

Kurtosis

48.16

Zeros

1,645,439

NumRelatedGenomes

integer

1000

HasProteomics

logical

1 true·0 false

HasConservation

logical

1 true·0 false

Version history

Version	Released	Size	Change	Stored as	Confidence
3.23	2026-04-28	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.22	2025-10-29	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.21	2025-04-15	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.20	2024-10-29	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.19	2024-04-30	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.18	2023-10-24	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.17	2023-04-25	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.16	2022-11-01	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.15	2022-04-26	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.14	2021-10-26	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.13	2021-05-19	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.12	2020-10-27	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.11	2020-04-27	16 elements	Unchanged	rda · xz version 3 · 3.8 MB	exact
3.10	2019-10-29	16 elements	–	rda · xz version 3 · 3.8 MB	exact