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redControlMatrix

Example of a matrix containing the red negative control probes from the Illumina 450k array

Bundled with ARRmData · exported, loads via data()

Class
data.frame
Dimensions
600 × 36
Missing
0
Format
rda · bzip2
version 2 · 24 KB
File
data/redControlMatrix.rda
Fingerprint
3501f7c9
Format documented
Yes
Source
Source not stated
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
5621146023_R01C01
integer
158
0
158 – 358mean 250.4
Min.
158
1st Qu.
225
Median
249
Mean
250.442
3rd Qu.
275
Max.
358
Std. dev
36.5187
Skewness
0.2073
Kurtosis
-0.2255
Outliers
20 low · 2 high
5621146023_R01C02
integer
207
0
227 – 559mean 367.5
Min.
227
1st Qu.
332
Median
365
Mean
367.545
3rd Qu.
400
Max.
559
Std. dev
53.4172
Skewness
0.2597
Kurtosis
0.2502
Outliers
92 low · 7 high
5621146023_R02C01
integer
145
0
164 – 412mean 240.5
Min.
164
1st Qu.
216
Median
239
Mean
240.495
3rd Qu.
262
Max.
412
Std. dev
33.9806
Skewness
0.4862
Kurtosis
0.8472
Outliers
50 low · 5 high
5621146023_R02C02
integer
168
0
150 – 403mean 273.2
Min.
150
1st Qu.
244
Median
268.5
Mean
273.165
3rd Qu.
301.25
Max.
403
Std. dev
40.9065
Skewness
0.3159
Kurtosis
-0.0873
Outliers
31 low · 2 high
5621146023_R03C01
integer
144
0
136 – 341mean 232.9
Min.
136
1st Qu.
210
Median
231.5
Mean
232.923
3rd Qu.
255.25
Max.
341
Std. dev
33.4075
Skewness
0.1949
Kurtosis
0.0614
Outliers
61 low · 5 high
5621146023_R03C02
integer
153
0
152 – 401mean 239.1
Min.
152
1st Qu.
214
Median
238
Mean
239.147
3rd Qu.
262.25
Max.
401
Std. dev
36.5828
Skewness
0.4949
Kurtosis
0.8985
Outliers
60 low · 6 high
5621146023_R04C01
integer
169
0
172 – 419mean 281.4
Min.
172
1st Qu.
251
Median
280
Mean
281.388
3rd Qu.
307
Max.
419
Std. dev
40.575
Skewness
0.3856
Kurtosis
0.1767
Outliers
70 low · 7 high
5621146023_R04C02
integer
167
0
157 – 396mean 269.1
Min.
157
1st Qu.
242
Median
268
Mean
269.113
3rd Qu.
291
Max.
396
Std. dev
38.5156
Skewness
0.2513
Kurtosis
0.227
Outliers
92 low · 7 high
5621146023_R05C01
integer
175
0
194 – 453mean 305
Min.
194
1st Qu.
275.75
Median
303
Mean
305.028
3rd Qu.
332
Max.
453
Std. dev
42.6937
Skewness
0.2136
Kurtosis
0.024
Outliers
30 low · 3 high
5621146023_R05C02
integer
153
0
160 – 422mean 254.5
Min.
160
1st Qu.
229
Median
252
Mean
254.467
3rd Qu.
277
Max.
422
Std. dev
36.2255
Skewness
0.4364
Kurtosis
0.7855
Outliers
50 low · 5 high
5621146023_R06C01
integer
199
0
248 – 554mean 379.5
Min.
248
1st Qu.
348
Median
379
Mean
379.497
3rd Qu.
416
Max.
554
Std. dev
50.502
Skewness
0.0133
Kurtosis
-0.0533
Outliers
30 low · 3 high
5621146023_R06C02
integer
184
0
198 – 466mean 331.3
Min.
198
1st Qu.
303
Median
330
Mean
331.302
3rd Qu.
360.25
Max.
466
Std. dev
43.8678
Skewness
0.047
Kurtosis
0.2271
Outliers
126 low · 6 high
5621146024_R01C01
integer
240
0
141 – 606mean 353.1
Min.
141
1st Qu.
309
Median
351
Mean
353.075
3rd Qu.
394.25
Max.
606
Std. dev
64.4178
Skewness
0.1232
Kurtosis
0.5422
Outliers
63 low · 3 high
5621146024_R01C02
integer
223
0
138 – 515mean 330.7
Min.
138
1st Qu.
291
Median
326.5
Mean
330.702
3rd Qu.
369
Max.
515
Std. dev
60.624
Skewness
0.142
Kurtosis
0.1147
Outliers
74 low · 3 high
5621146024_R02C01
integer
226
0
116 – 631mean 357.4
Min.
116
1st Qu.
316
Median
358
Mean
357.35
3rd Qu.
394
Max.
631
Std. dev
62.913
Skewness
0.2821
Kurtosis
1.021
Outliers
103 low · 7 high
5621146024_R02C02
integer
227
0
152 – 590mean 341.9
Min.
152
1st Qu.
303.75
Median
338
Mean
341.863
3rd Qu.
381
Max.
590
Std. dev
60.919
Skewness
0.1219
Kurtosis
0.3013
Outliers
103 low · 7 high
5621146024_R03C01
integer
252
0
160 – 735mean 394.1
Min.
160
1st Qu.
346
Median
392.5
Mean
394.087
3rd Qu.
438
Max.
735
Std. dev
72.2295
Skewness
0.3833
Kurtosis
1.487
Outliers
145 low · 9 high
5621146024_R03C02
integer
244
0
272 – 702mean 455.1
Min.
272
1st Qu.
414
Median
453
Mean
455.092
3rd Qu.
500
Max.
702
Std. dev
67.9001
Skewness
0.1158
Kurtosis
0.2983
Outliers
104 low · 6 high
5621146024_R04C01
integer
254
0
151 – 649mean 410.4
Min.
151
1st Qu.
360
Median
413
Mean
410.373
3rd Qu.
456
Max.
649
Std. dev
72.7928
Skewness
-0.0248
Kurtosis
0.134
Outliers
73 low · 4 high
5621146024_R04C02
integer
244
0
266 – 646mean 438.3
Min.
266
1st Qu.
389
Median
434.5
Mean
438.27
3rd Qu.
485
Max.
646
Std. dev
67.9567
Skewness
0.2836
Kurtosis
-0.2426
Outliers
30 low · 3 high
5621146024_R05C01
integer
226
0
173 – 626mean 413.1
Min.
173
1st Qu.
368.75
Median
412.5
Mean
413.15
3rd Qu.
454
Max.
626
Std. dev
64.6004
Skewness
0.2099
Kurtosis
0.4822
Outliers
92 low · 7 high
5621146024_R05C02
integer
245
0
197 – 659mean 401.8
Min.
197
1st Qu.
351.75
Median
397.5
Mean
401.802
3rd Qu.
450
Max.
659
Std. dev
69.073
Skewness
0.2822
Kurtosis
0.2256
Outliers
51 low · 4 high
5621146024_R06C01
integer
280
0
252 – 798mean 534.8
Min.
252
1st Qu.
477
Median
530
Mean
534.802
3rd Qu.
593.25
Max.
798
Std. dev
88.485
Skewness
0.1158
Kurtosis
-0.0472
Outliers
84 low · 4 high
5621146024_R06C02
integer
278
0
229 – 729mean 471.7
Min.
229
1st Qu.
419
Median
469
Mean
471.683
3rd Qu.
522.5
Max.
729
Std. dev
81.8285
Skewness
0.0134
Kurtosis
0.1054
Outliers
95 low · 4 high
5621146025_R01C01
integer
219
0
206 – 616mean 377.8
Min.
206
1st Qu.
340.75
Median
376
Mean
377.847
3rd Qu.
413.25
Max.
616
Std. dev
60.2896
Skewness
0.2839
Kurtosis
0.509
Outliers
156 low · 9 high
5621146025_R01C02
integer
219
0
120 – 592mean 342
Min.
120
1st Qu.
303
Median
343.5
Mean
341.962
3rd Qu.
382.25
Max.
592
Std. dev
64.0538
Skewness
-0.0113
Kurtosis
0.538
Outliers
95 low · 4 high
5621146025_R02C01
integer
229
0
165 – 599mean 348.1
Min.
165
1st Qu.
306
Median
345
Mean
348.078
3rd Qu.
387.25
Max.
599
Std. dev
61.3784
Skewness
0.3116
Kurtosis
0.4681
Outliers
71 low · 6 high
5621146025_R02C02
integer
230
0
178 – 632mean 374.4
Min.
178
1st Qu.
332.75
Median
373
Mean
374.432
3rd Qu.
410.25
Max.
632
Std. dev
61.3065
Skewness
0.2807
Kurtosis
0.6965
Outliers
135 low · 8 high
5621146025_R03C01
integer
244
0
229 – 673mean 407.1
Min.
229
1st Qu.
363
Median
405
Mean
407.103
3rd Qu.
450
Max.
673
Std. dev
66.5207
Skewness
0.2399
Kurtosis
0.1854
Outliers
61 low · 5 high
5621146025_R03C02
integer
235
0
220 – 583mean 405.9
Min.
220
1st Qu.
365.75
Median
404
Mean
405.95
3rd Qu.
443
Max.
583
Std. dev
63.319
Skewness
0.1123
Kurtosis
0.0707
Outliers
124 low · 8 high
5621146025_R04C01
integer
247
0
274 – 695mean 447.2
Min.
274
1st Qu.
400.75
Median
450
Mean
447.23
3rd Qu.
490
Max.
695
Std. dev
67.5804
Skewness
0.1987
Kurtosis
0.0399
Outliers
60 low · 6 high
5621146025_R04C02
integer
240
0
243 – 753mean 426.8
Min.
243
1st Qu.
384
Median
423
Mean
426.817
3rd Qu.
467
Max.
753
Std. dev
65.2432
Skewness
0.2846
Kurtosis
0.7618
Outliers
52 low · 3 high
5621146025_R05C01
integer
252
0
313 – 697mean 505.3
Min.
313
1st Qu.
457
Median
502.5
Mean
505.338
3rd Qu.
553.25
Max.
697
Std. dev
70.8359
Skewness
0.1434
Kurtosis
-0.2057
5621146025_R05C02
integer
257
0
300 – 878mean 518.3
Min.
300
1st Qu.
468.75
Median
517
Mean
518.295
3rd Qu.
566
Max.
878
Std. dev
74.9017
Skewness
0.3781
Kurtosis
0.7722
Outliers
71 low · 6 high
5621146025_R06C01
integer
281
0
410 – 881mean 650
Min.
410
1st Qu.
589.75
Median
646
Mean
649.982
3rd Qu.
707
Max.
881
Std. dev
86.7759
Skewness
0.1057
Kurtosis
-0.2347
Outliers
11 low · 0 high
5621146025_R06C02
integer
276
0
393 – 917mean 635.2
Min.
393
1st Qu.
578
Median
630
Mean
635.213
3rd Qu.
690
Max.
917
Std. dev
83.3278
Skewness
0.195
Kurtosis
0.0264
Outliers
51 low · 4 high
Same structure in 1 other dataset

These datasets share the same columns and types but hold different data.

ARRmDatagreenControlMatrix
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.222025-10-29600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.212025-04-15600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.202024-10-29600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.192024-04-30600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.182023-10-24600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.172023-04-25600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.162022-11-01600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.152022-04-26600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.142021-10-26600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.132021-05-19600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.122020-10-27600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.112020-04-27600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.102019-10-29600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.92019-05-02600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.82018-10-30600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.72018-04-30600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.62017-10-30600 × 36Unchangedrda · bzip2
version 2 · 24 KB
exact
3.52017-08-16600 × 36–rda · bzip2
version 2 · 24 KB
exact

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