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betaMatrix

Example of a matrix of Beta values from the Illumina 450k array

Bundled with ARRmData · exported, loads via data()

Class
data.frame
Dimensions
485,577 × 36
Missing
8,038
Format
rda · xz
version 2 · 56 MB
File
data/betaMatrix.rda
Fingerprint
9bac30a6
Format documented
Yes
Source
Source not stated
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Columns
Column
Type
Distinct
Missing
Summary
5621146023_R01C01
numeric
463,148
264
0.0024 – 0.991mean 0.5368
Min.
0.0024
1st Qu.
0.1122
Median
0.6916
Mean
0.5368
3rd Qu.
0.8835
Max.
0.991
Std. dev
0.363
Skewness
-0.2847
Kurtosis
-1.677
Longest gap
2
5621146023_R01C02
numeric
462,863
166
0.0009 – 0.9932mean 0.5413
Min.
0.0009
1st Qu.
0.1094
Median
0.7145
Mean
0.5413
3rd Qu.
0.8832
Max.
0.9932
Std. dev
0.3646
Skewness
-0.3129
Kurtosis
-1.676
5621146023_R02C01
numeric
457,714
168
0.0033 – 0.9907mean 0.5624
Min.
0.0033
1st Qu.
0.1233
Median
0.756
Mean
0.5624
3rd Qu.
0.9074
Max.
0.9907
Std. dev
0.3711
Skewness
-0.3572
Kurtosis
-1.657
5621146023_R02C02
numeric
461,652
174
0.0024 – 0.9915mean 0.552
Min.
0.0024
1st Qu.
0.1167
Median
0.732
Mean
0.552
3rd Qu.
0.8989
Max.
0.9915
Std. dev
0.369
Skewness
-0.3266
Kurtosis
-1.672
5621146023_R03C01
numeric
460,577
163
0.0027 – 0.9928mean 0.5638
Min.
0.0027
1st Qu.
0.1328
Median
0.7422
Mean
0.5638
3rd Qu.
0.9026
Max.
0.9928
Std. dev
0.3641
Skewness
-0.3725
Kurtosis
-1.616
5621146023_R03C02
numeric
458,523
162
0.0012 – 0.9909mean 0.5627
Min.
0.0012
1st Qu.
0.1215
Median
0.7585
Mean
0.5627
3rd Qu.
0.9083
Max.
0.9909
Std. dev
0.3723
Skewness
-0.3606
Kurtosis
-1.657
5621146023_R04C01
numeric
461,804
218
0.0021 – 0.991mean 0.5491
Min.
0.0021
1st Qu.
0.1254
Median
0.7167
Mean
0.5491
3rd Qu.
0.895
Max.
0.991
Std. dev
0.3648
Skewness
-0.3107
Kurtosis
-1.671
5621146023_R04C02
numeric
457,968
213
0.0051 – 0.9917mean 0.5638
Min.
0.0051
1st Qu.
0.1255
Median
0.7639
Mean
0.5638
3rd Qu.
0.91
Max.
0.9917
Std. dev
0.3728
Skewness
-0.3549
Kurtosis
-1.667
Longest gap
2
5621146023_R05C01
numeric
457,712
192
0.0044 – 0.9925mean 0.5683
Min.
0.0044
1st Qu.
0.1313
Median
0.7648
Mean
0.5683
3rd Qu.
0.9076
Max.
0.9925
Std. dev
0.3681
Skewness
-0.3806
Kurtosis
-1.634
5621146023_R05C02
numeric
461,263
173
0.0035 – 0.9938mean 0.5679
Min.
0.0035
1st Qu.
0.1451
Median
0.7336
Mean
0.5679
3rd Qu.
0.905
Max.
0.9938
Std. dev
0.3604
Skewness
-0.3829
Kurtosis
-1.586
5621146023_R06C01
numeric
460,888
268
0.0042 – 0.993mean 0.556
Min.
0.0042
1st Qu.
0.127
Median
0.7356
Mean
0.556
3rd Qu.
0.8991
Max.
0.993
Std. dev
0.3663
Skewness
-0.3365
Kurtosis
-1.66
5621146023_R06C02
numeric
460,049
197
0.0012 – 0.9912mean 0.5686
Min.
0.0012
1st Qu.
0.1412
Median
0.7498
Mean
0.5686
3rd Qu.
0.9058
Max.
0.9912
Std. dev
0.3635
Skewness
-0.3846
Kurtosis
-1.606
5621146024_R01C01
numeric
471,158
329
0.001 – 0.9957mean 0.46
Min.
0.001
1st Qu.
0.0766
Median
0.4786
Mean
0.46
3rd Qu.
0.8383
Max.
0.9957
Std. dev
0.3566
Skewness
0.0397
Kurtosis
-1.697
Longest gap
2
5621146024_R01C02
numeric
467,368
303
0.0009 – 0.9932mean 0.5171
Min.
0.0009
1st Qu.
0.0892
Median
0.6593
Mean
0.5171
3rd Qu.
0.8669
Max.
0.9932
Std. dev
0.3644
Skewness
-0.2299
Kurtosis
-1.712
5621146024_R02C01
numeric
469,503
278
0.0008 – 0.9956mean 0.5218
Min.
0.0008
1st Qu.
0.1141
Median
0.6342
Mean
0.5218
3rd Qu.
0.8586
Max.
0.9956
Std. dev
0.3495
Skewness
-0.2466
Kurtosis
-1.634
5621146024_R02C02
numeric
468,963
257
0.0005 – 0.9954mean 0.5177
Min.
0.0005
1st Qu.
0.1022
Median
0.6362
Mean
0.5177
3rd Qu.
0.8608
Max.
0.9954
Std. dev
0.3551
Skewness
-0.2307
Kurtosis
-1.663
5621146024_R03C01
numeric
470,318
221
0.0012 – 0.9939mean 0.5154
Min.
0.0012
1st Qu.
0.1155
Median
0.6145
Mean
0.5154
3rd Qu.
0.8504
Max.
0.9939
Std. dev
0.3448
Skewness
-0.219
Kurtosis
-1.627
5621146024_R03C02
numeric
467,605
165
0.001 – 0.9957mean 0.5278
Min.
0.001
1st Qu.
0.1067
Median
0.6684
Mean
0.5278
3rd Qu.
0.8744
Max.
0.9957
Std. dev
0.3605
Skewness
-0.2483
Kurtosis
-1.692
5621146024_R04C01
numeric
469,496
263
0.0016 – 0.9947mean 0.4951
Min.
0.0016
1st Qu.
0.0934
Median
0.5743
Mean
0.4951
3rd Qu.
0.8595
Max.
0.9947
Std. dev
0.3597
Skewness
-0.1123
Kurtosis
-1.728
5621146024_R04C02
numeric
467,073
254
0.0013 – 0.9945mean 0.535
Min.
0.0013
1st Qu.
0.1126
Median
0.6798
Mean
0.535
3rd Qu.
0.8765
Max.
0.9945
Std. dev
0.3585
Skewness
-0.2821
Kurtosis
-1.665
5621146024_R05C01
numeric
465,754
214
0.0016 – 0.9947mean 0.5285
Min.
0.0016
1st Qu.
0.1044
Median
0.67
Mean
0.5285
3rd Qu.
0.8828
Max.
0.9947
Std. dev
0.3657
Skewness
-0.2343
Kurtosis
-1.718
5621146024_R05C02
numeric
468,385
208
0.0009 – 0.9954mean 0.5288
Min.
0.0009
1st Qu.
0.1176
Median
0.6529
Mean
0.5288
3rd Qu.
0.8707
Max.
0.9954
Std. dev
0.3541
Skewness
-0.2532
Kurtosis
-1.653
Longest gap
2
5621146024_R06C01
numeric
469,069
253
0.0008 – 0.9947mean 0.53
Min.
0.0008
1st Qu.
0.1262
Median
0.6504
Mean
0.53
3rd Qu.
0.8646
Max.
0.9947
Std. dev
0.3482
Skewness
-0.2646
Kurtosis
-1.628
5621146024_R06C02
numeric
468,675
214
0.0005 – 0.9962mean 0.5225
Min.
0.0005
1st Qu.
0.1072
Median
0.6521
Mean
0.5225
3rd Qu.
0.8678
Max.
0.9962
Std. dev
0.3574
Skewness
-0.2327
Kurtosis
-1.684
5621146025_R01C01
numeric
468,621
300
0.001 – 0.9944mean 0.5058
Min.
0.001
1st Qu.
0.0917
Median
0.6192
Mean
0.5058
3rd Qu.
0.8547
Max.
0.9944
Std. dev
0.3578
Skewness
-0.1867
Kurtosis
-1.699
5621146025_R01C02
numeric
469,920
360
0.0002 – 0.9958mean 0.5039
Min.
0.0002
1st Qu.
0.0969
Median
0.6056
Mean
0.5039
3rd Qu.
0.842
Max.
0.9958
Std. dev
0.3503
Skewness
-0.1967
Kurtosis
-1.651
Longest gap
2
5621146025_R02C01
numeric
468,794
233
0.0013 – 0.995mean 0.5123
Min.
0.0013
1st Qu.
0.0992
Median
0.6281
Mean
0.5123
3rd Qu.
0.8619
Max.
0.995
Std. dev
0.3579
Skewness
-0.1964
Kurtosis
-1.696
5621146025_R02C02
numeric
466,766
207
0.0009 – 0.9949mean 0.5207
Min.
0.0009
1st Qu.
0.0925
Median
0.6673
Mean
0.5207
3rd Qu.
0.871
Max.
0.9949
Std. dev
0.3653
Skewness
-0.2367
Kurtosis
-1.714
5621146025_R03C01
numeric
465,845
230
0.0009 – 0.9955mean 0.5231
Min.
0.0009
1st Qu.
0.0988
Median
0.6661
Mean
0.5231
3rd Qu.
0.8802
Max.
0.9955
Std. dev
0.3679
Skewness
-0.2172
Kurtosis
-1.733
5621146025_R03C02
numeric
467,788
247
0.0013 – 0.9959mean 0.5221
Min.
0.0013
1st Qu.
0.1035
Median
0.6557
Mean
0.5221
3rd Qu.
0.8674
Max.
0.9959
Std. dev
0.359
Skewness
-0.2368
Kurtosis
-1.687
Longest gap
2
5621146025_R04C01
numeric
463,673
194
0.0011 – 0.9943mean 0.5339
Min.
0.0011
1st Qu.
0.1123
Median
0.6904
Mean
0.5339
3rd Qu.
0.8852
Max.
0.9943
Std. dev
0.3658
Skewness
-0.2506
Kurtosis
-1.72
Longest gap
2
5621146025_R04C02
numeric
467,282
293
0.0011 – 0.9944mean 0.5324
Min.
0.0011
1st Qu.
0.1145
Median
0.6677
Mean
0.5324
3rd Qu.
0.8746
Max.
0.9944
Std. dev
0.3572
Skewness
-0.2694
Kurtosis
-1.661
5621146025_R05C01
numeric
463,385
145
0.0032 – 0.9922mean 0.5438
Min.
0.0032
1st Qu.
0.1257
Median
0.7072
Mean
0.5438
3rd Qu.
0.8852
Max.
0.9922
Std. dev
0.3602
Skewness
-0.2918
Kurtosis
-1.687
5621146025_R05C02
numeric
465,539
213
0.0024 – 0.9939mean 0.5325
Min.
0.0024
1st Qu.
0.1182
Median
0.6779
Mean
0.5325
3rd Qu.
0.8783
Max.
0.9939
Std. dev
0.3595
Skewness
-0.2494
Kurtosis
-1.7
5621146025_R06C01
numeric
462,583
134
0.0048 – 0.9921mean 0.5524
Min.
0.0048
1st Qu.
0.141
Median
0.7202
Mean
0.5524
3rd Qu.
0.8872
Max.
0.9921
Std. dev
0.3561
Skewness
-0.3201
Kurtosis
-1.661
5621146025_R06C02
numeric
463,717
165
0.0059 – 0.9934mean 0.5477
Min.
0.0059
1st Qu.
0.132
Median
0.7118
Mean
0.5477
3rd Qu.
0.8869
Max.
0.9934
Std. dev
0.3587
Skewness
-0.3034
Kurtosis
-1.672
Longest gap
2
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.222025-10-29485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.212025-04-15485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.202024-10-29485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.192024-04-30485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.182023-10-24485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.172023-04-25485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.162022-11-01485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.152022-04-26485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.142021-10-26485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.132021-05-19485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.122020-10-27485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.112020-04-27485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.102019-10-29485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.92019-05-02485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.82018-10-30485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.72018-04-30485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.62017-10-30485,577 × 36Unchangedrda · xz
version 2 · 56 MB
exact
3.52017-08-16485,577 × 36–rda · xz
version 2 · 56 MB
exact

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