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QMP

Quantitative Microbiome Project data

Bundled with ANCOMBC · exported, loads via data()

Class
matrix
Dimensions
106 × 91
Missing
0
Format
rda · xz
version 3 · 44 KB
File
data/QMP.rda
Fingerprint
e29ed2f7
Format documented
Yes
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
9,646
Missing
0
Min.
0
1st Qu.
0
Median
1.48473e+7
Mean
1.39583e+9
3rd Qu.
3.74292e+8
Max.
9.12321e+10
Std. dev
5.29651e+9
Distinct
6,144
Skewness
7.462
Kurtosis
75.9
Zeros
2,614 27.1%
Outliers
1,690 0 low · 1690 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows6.4321e+78.0348e+81.3462e+91.3958e+91.8481e+93.3644e+97.5165e+8
Columns8.4658e+52.2194e+71.2939e+81.3958e+97.1081e+82.8052e+103.8743e+9

The column means vary far more than the row means, so what separates the values runs across the columns.

Dimensions and labels
MarginLabelsCount
RowsSC10, DC95, DC49, SC13, SC20, SC21, SC05, SC22, SC28, SC37, SC08, SC39, …106
Columns588755, 313387, 4456091, 554296, 183954, 509621, 287510, 682726, 357305, 178759, 163857, 4472721, …91
Columns

This object is 91 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

1 other dataset carries the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 91 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28106 × 91Unchangedrda · xz
version 3 · 44 KB
exact
3.222026-03-14106 × 91Unchangedrda · xz
version 3 · 44 KB
exact
3.212025-05-20106 × 91Unchangedrda · xz
version 3 · 44 KB
exact
3.202025-01-07106 × 91Unchangedrda · xz
version 3 · 44 KB
exact
3.192024-04-30106 × 91Unchangedrda · xz
version 3 · 44 KB
exact
3.182023-10-24106 × 91Unchangedrda · xz
version 3 · 44 KB
exact
3.172023-09-19106 × 91Unchangedrda · xz
version 3 · 44 KB
exact
3.162023-03-25106 × 91Unchangedrda · xz
version 3 · 44 KB
exact
3.152022-10-17106 × 91–rda · xz
version 3 · 44 KB
exact

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