struct
Bioc currentStatistics in R Using Class-based Templates
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
Defines and includes a set of class-based templates for developing and implementing data processing and analysis workflows, with a strong emphasis on statistics and machine learning. The templates can be used and where needed extended to 'wrap' tools and methods from other packages into a common standardised structure to allow for effective and fast integration. Model objects can be combined into sequences, and sequences nested in iterators using overloaded operators to simplify and improve readability of the code. Ontology lookup has been integrated and implemented to provide standardised definitions for methods, inputs and outputs wrapped using the class-based templates.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
43 24 exported
Complexity
2.7 avg / 24 max
Call network
43 nodes / 24 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,416
Files
100
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
67
Internal functions
19
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.18
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
8
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-04-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 66 (2 internal)includes a package overview page
- Examples that run
- 93%51 run in a plain check · 4 never run
- Exported functions with examples
- 89%
- Documented parameters
- 98%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
2 practices detected in the Bioconductor git repository
Topics
Depended on by (3)
Bioconductor (3)
People
- Gavin Rhys Lloyd author maintainer
- Ralf Johannes Maria Weber author
Cite
Cite this package
Run in R for the authors' entry:
citation("struct")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btaa1031.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.