smartid
Bioc currentScoring and Marker Selection Method Based on Modified TF-IDF
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
This package enables automated selection of group specific signature, especially for rare population. The package is developed for generating specifc lists of signature genes based on Term Frequency-Inverse Document Frequency (TF-IDF) modified methods. It can also be used as a new gene-set scoring method or data transformation method. Multiple visualization functions are implemented in this package.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
48 12 exported
Complexity
2.4 avg / 9 max
Call network
48 nodes / 41 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,265
Files
71
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
15
Internal functions
35
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.32
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-05-26
Latest release
2026-04-28
Avg cadence
162 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Jinjin Chen author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("smartid")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.