selectKSigs
Bioc currentSelecting the number of mutational signatures using a perplexity-based measure and cross-validation
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
21 2 exported
Complexity
1.7 avg / 5 max
Call network
21 nodes / 17 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,478
Files
39
Compiled share
25.4%
Has compiled src
Yes
Language breakdown
API
Exported functions
2
Internal functions
8
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-04-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Zhi Yang author maintainer
- Yuichi Shiraishi contributor