rqt
Bioc currentrqt: utilities for gene-level meta-analysis
Release Lineage
Entered 3.5 · Apr 25, 2017
Current · Requires R 4.6
Description
Despite the recent advances of modern GWAS methods, it still remains an important problem of addressing calculation an effect size and corresponding p-value for the whole gene rather than for single variant. The R- package rqt offers gene-level GWAS meta-analysis. For more information, see: "Gene-set association tests for next-generation sequencing data" by Lee et al (2016), Bioinformatics, 32(17), i611-i619, <doi:10.1093/bioinformatics/btw429>.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
14 1 exported
Complexity
4.9 avg / 32 max
Call network
14 nodes / 11 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,992
Files
61
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
13
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.03
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4
System requirements
–
C++ standard
–
License
GPL
License flags
not SPDX, not OSI
History
Versions
19
First release
2017-06-29
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Ilya Zhbannikov author maintainer
- Konstantin Arbeev author
- Anatoliy Yashin author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("rqt")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.