rgoslin
Bioc currentLipid Shorthand Name Parsing and Normalization
Release Lineage
Entered 3.15 · Apr 27, 2022
Current · Requires R 4.6
Description
The R implementation for the Grammar of Succint Lipid Nomenclature parses different short hand notation dialects for lipid names. It normalizes them to a standard name. It further provides calculated monoisotopic masses and sum formulas for each successfully parsed lipid name and supplements it with LIPID MAPS Category and Class information. Also, the structural level and further structural details about the head group, fatty acyls and functional groups are returned, where applicable.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
607 3 exported
Complexity
1.6 avg / 4 max
Call network
607 nodes / 269 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
15,815
Files
128
Compiled share
94.3%
Has compiled src
Yes
Language breakdown
API
Exported functions
3
Internal functions
4
Testing & CI
Has tests
Yes
Test-to-code ratio
2.52
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
50%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
C++11
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
9
First release
2022-10-16
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 25%
Topics
Depended on by (1)
Bioconductor (1)
People
- Nils Hoffmann author maintainer
- Dominik Kopczynski author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("rgoslin")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.