paxtoolsr
Bioc removedAccess Pathways from Multiple Databases Through BioPAX and Pathway Commons
Release Lineage
Entered 3.0 · Oct 14, 2014
Removed after 3.21 · Apr 16, 2025
Description
The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular interaction database. Pathway Commons is a project by the Memorial Sloan-Kettering Cancer Center (MSKCC), Dana-Farber Cancer Institute (DFCI), and the University of Toronto. Pathway Commons databases include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG, MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.
None published for Bioconductor
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- Augustin Luna author maintainer
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