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oppar

Bioc current

Outlier profile and pathway analysis in R

v1.40.0 · software · GPL-2
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Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

The R implementation of mCOPA package published by Wang et al. (2012). Oppar provides methods for Cancer Outlier profile Analysis. Although initially developed to detect outlier genes in cancer studies, methods presented in oppar can be used for outlier profile analysis in general. In addition, tools are provided for gene set enrichment and pathway analysis.

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Topics

Software › WorkflowStep › Pathways
Software › BiologicalQuestion › GeneSetEnrichment
Software › ResearchField › SystemsBiology
Software › AssayDomain › GeneExpression
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