msqc1
Bioc currentSigma mix MSQC1 data
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
contains eight technical replicate data set and a three replicate dilution series of the MS Qual/Quant Quality Control Mix standard sample (Sigma-Aldrich, Buchs, Switzerland) measured on five different mass spectrometer platforms at the Functional Genomics Center Zurich.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
23 0 exported
Complexity
1.3 avg / 3 max
Call network
23 nodes / 17 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,749
Files
36
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
23
Testing
Has tests
Yes
Test-to-code ratio
0.03
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
–
C++ standard
–
License
GPL
License flags
not SPDX, not OSI
History
Versions
21
First release
2016-05-15
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 7includes a package overview page
- Examples that run
- 100%7 run in a plain check
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 86%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| msqc1_8rep | msqc1 | 6,272 × 16 | No other package |
| msqc1_8rep_QEXACTIVEHF_assayDevel | msqc1 | 1,864 × 16 | No other package |
| msqc1_8rep_tripleTOF5600_assayDevel | msqc1 | 1,616 × 17 | No other package |
| msqc1_dil | msqc1 | 15,300 × 15 | No other package |
| msqc1_userstudy | msqc1 | 21,204 × 17 | No other package |
| peptides | data.frame | 14 × 5 | No other package |
Topics
Suggested by (1)
People
- Christian Panse author maintainer
- Tobias Kockmann author
- Christian Trachsel author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("msqc1")The package provides a citation file that builds its entry when R runs it. Run citation() to see it.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.