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iClusterPlus

Bioc current

Integrative clustering of multi-type genomic data

v1.48.0 · software · GPL (>= 2)

Release Lineage

Entered 2.14 · Apr 14, 2014

Current · Requires R 4.6

1.0 In 25 of 49 releases 3.23

Description

Integrative clustering of multiple genomic data using a joint latent variable model.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

185 21 exported

Complexity

12 avg / 54 max

Call network

185 nodes / 440 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

14,751

Files

77

Compiled share

71.2%

Has compiled src

Yes

Language breakdown

R 2,899 (19.7%)C/C++/src 10,510 (71.2%)Tests 1 (0%)Docs 1,262 (8.6%)Vignettes 79 (0.5%)

API

Exported functions

21

Internal functions

14

Recent export changes

v3.7+3 iClusterBayes, tune.iClusterBayes, plotHMBayes

Testing & CI

Has tests

Yes

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

2

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.1.0

System requirements

C++ standard

License

GPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

25

First release

2014-05-09

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

1

LOC over versions

v2.14: 10,490 LOCv3.0: 10,490 LOCv3.1: 10,490 LOCv3.2: 10,490 LOCv3.3: 10,490 LOCv3.4: 10,511 LOCv3.5: 10,511 LOCv3.6: 10,511 LOCv3.7: 13,756 LOCv3.8: 13,763 LOCv3.9: 13,761 LOCv3.10: 13,761 LOCv3.11: 13,761 LOCv3.12: 13,764 LOCv3.13: 13,764 LOCv3.14: 13,764 LOCv3.15: 13,764 LOCv3.16: 13,764 LOCv3.17: 13,776 LOCv3.18: 13,776 LOCv3.19: 13,776 LOCv3.20: 13,776 LOCv3.21: 13,776 LOCv3.22: 13,776 LOCv3.23: 14,751 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
97%
Return-value docs
100%
References docs
100%

Topics

Depended on by (1)

Bioconductor (1)

People

Qianxing Mo

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("iClusterPlus")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for iClusterPlus version 1.48.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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