gg4way
Bioc current4way Plots of Differential Expression
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
17 4 exported
Complexity
3.2 avg / 16 max
Call network
17 nodes / 13 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,672
Files
26
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
4
Internal functions
13
Testing
Has tests
Yes
Test-to-code ratio
17.77
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
6
First release
2024-01-31
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11 (8 internal)
- Examples that run
- 100%2 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- gg4way HTML
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/ben-laufer/gg4way on 2026-10-22.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| airwayFit | MArrayLM | 23 elements | No other package |
Topics
People
- Benjamin I Laufer author maintainer
- Brad A Friedman author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("gg4way")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.