customCMPdb
Bioc currentCustomize and Query Compound Annotation Database
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
15 11 exported
Complexity
2.9 avg / 13 max
Call network
15 nodes / 7 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,024
Files
33
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
11
Internal functions
4
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 95%
- Return-value docs
- 88%
- References docs
- 10%
Topics
People
- Yuzhu Duan author maintainer
- Thomas Girke author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("customCMPdb")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.