clustifyrdatahub
Bioc currentExternal data sets for clustifyr in ExperimentHub
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr <https://bioconductor.org/packages/clustifyr> to assign cell type identities.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
1 0 exported
Complexity
1 avg / 1 max
Call network
1 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
673
Files
36
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
1
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 12 (1 internal)includes a package overview page
- Examples that run
- 100%11 run in a plain check
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 0%
- clustifyrdatahub HTML
Repository practices
7 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/rnabioco/clustifyrdatahub on 2026-10-25.
The R CMD check workflow runs on Linux
GitHub Pages site last deployed 2022-11-07 · The repository has a site deploy workflow
pkgdown site last built 2022-11-07
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| metadata | data.frame | 11 × 15 | No other package |
Topics
People
- Kent Riemondy author maintainer
- RNA Bioscience Initiative funder
- Rui Fu author
- Austin Gillen contributor
- Jay Hesselberth contributor
- Sidhant Puntambekar contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("clustifyrdatahub")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.