asuri
Bioc currentAnalysis of SUrvival and RIsk prediction in patients based on gene signatures
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
The ASURI (Analysis of SUrvival and patients RIsk prediction based on gene signatures) package discovers marker genes that are related to risk prediction capabilities and to a clinical variable of interest. It uses two main steps, including subsampling glmnet and unicox. The package implements robust functions to discover survival markers related to a clinical phenotype and to predict a risk score, allowing to study the patient's risk based on the gene signatures. Several plots are provided to visualise the relevance of the genes, the risk score, and patient stratification, as well as a robust version of the Kaplan-Meier curves.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
35 13 exported
Complexity
5.9 avg / 25 max
Call network
35 nodes / 30 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
7,185
Files
51
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
13
Internal functions
22
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
LGPL-3 + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-04-28
Latest release
2026-04-28
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 37%
Topics
People
- Alberto Berral-Gonzalez author maintainer contributor
- Natalia Alonso-Moreda author contributor
- Santiago Bueno-Fortes author contributor
- Javier De Las Rivas author contributor
- Manuel Martin-Merino Acera author contributor
- María Sanchez-Martin author contributor
- Jose Manuel Sanchez-Santos author contributor