TransOmicsData
Bioc currentA collection of trans-omics datasets across various biological systems
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
Contains a collection of trans-omics datasets generated using various sequencing technologies such as RNA-seq, Mass spectrometry and ChIP-seq. Modalities include the bulk profiling of the phosphoproteome, proteome, transcriptome and epigenome. Data reflects the timecourses of different developmental systems from the mouse or human.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
1 1 exported
Complexity
1 avg / 1 max
Call network
1 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
155
Files
25
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
0
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.54
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3 + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-05-28
Latest release
2026-04-28
Avg cadence
175 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 1
- Examples that run
- 100%1 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks run against github.com/pyanglab/transomicsdata on 2026-10-21.
No development-tooling practices detected in the upstream repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| manifest | data.frame | 3 × 5 | No other package |
| metadata-chen-organoid | data.frame | 4 × 15 | No other package |
| metadata-xiao-myogenesis | data.frame | 4 × 15 | No other package |
| metadata-yang-esc | data.frame | 4 × 15 | No other package |
Topics
People
- Di Xiao author maintainer
- Carissa Chen author
- Pengyi Yang author
Cite
Cite this package
Run in R for the authors' entry:
citation("TransOmicsData")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.18129/b9.bioc.transomicsdata.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.