TEKRABber
Bioc currentAn R package estimates the correlations of orthologs and transposable elements between two species
Release Lineage
Entered 3.15 · Apr 27, 2022
Current · Requires R 4.6
Description
TEKRABber is made to provide a user-friendly pipeline for comparing orthologs and transposable elements (TEs) between two species. It considers the orthology confidence between two species from BioMart to normalize expression counts and detect differentially expressed orthologs/TEs. Then it provides one to one correlation analysis for desired orthologs and TEs. There is also an app function to have a first insight on the result. Users can prepare orthologs/TEs RNA-seq expression data by their own preference to run TEKRABber following the data structure mentioned in the vignettes.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
11 6 exported
Complexity
1.8 avg / 5 max
Call network
11 nodes / 2 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,140
Files
43
Compiled share
4.1%
Has compiled src
Yes
Language breakdown
API
Exported functions
6
Internal functions
2
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.22
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
7.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3
System requirements
–
C++ standard
–
License
LGPL (>=3)
License flags
not SPDX, not OSI
History
Versions
9
First release
2022-06-09
Latest release
2026-04-28
Avg cadence
179 days
Cold removal rate
100%
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Yao-Chung Chen author maintainer
- Katja Nowick author