TCGAWorkflowData
Bioc currentData for TCGA Workflow
Release Lineage
Entered 3.5 · Apr 25, 2017
Current · Requires R 4.6
Description
This experimental data package contains 11 data sets necessary to follow the "TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages".
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
768
Files
31
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
0
Testing
Has tests
Yes
Test-to-code ratio
0.24
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
19
First release
2017-08-16
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 14 (13 internal)includes a package overview page
- Examples that run
- 100%14 run in a plain check
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 0%
Repository practices
2 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/bioinformaticsfmrp/tcgaworkflow on 2026-10-18.
GitHub Pages site last deployed 2018-01-21
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| biogrid | – | – | – |
| exp | – | – | – |
| exp_gbm | – | – | – |
| exp_lgg | – | – | – |
| gbm.samples | vector | 10 elements | No other package |
| gbm_gistic | – | – | – |
| genes | data.frame | 60,482 × 4 | No other package |
| genes_GR | – | – | – |
| histone.marks | list | 7 elements | No other package |
| lgg.samples | vector | 10 elements | No other package |
| maf_lgg_gbm | – | – | – |
| met | – | – | – |
Topics
Depended on by (1)
Bioconductor (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("TCGAWorkflowData")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.