SimBenchData
Bioc currentSimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics
Release Lineage
Entered 3.13 · May 20, 2021
Current · Requires R 4.6
Description
The SimBenchData package contains a total of 35 single-cell RNA-seq datasets covering a wide range of data characteristics, including major sequencing protocols, multiple tissue types, and both human and mouse sources.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
2 2 exported
Complexity
1.5 avg / 2 max
Call network
2 nodes / 1 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
258
Files
113
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
0
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
11
First release
2021-05-19
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 2
- Examples that run
- 100%2 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| additional_description | data.frame | 35 × 6 | No other package |
| metadata-293t-cellline | data.frame | 1 × 15 | No other package |
| metadata-293t_jurkat | data.frame | 1 × 15 | No other package |
| metadata-BC01-blood | data.frame | 1 × 15 | No other package |
| metadata-BC01-normal | data.frame | 1 × 15 | No other package |
| metadata-BC02-lymph | data.frame | 1 × 15 | No other package |
| metadata-BC02-tumor | data.frame | 1 × 15 | No other package |
| metadata-BC09-tumor | data.frame | 1 × 15 | No other package |
| metadata-Breast-cellline | data.frame | 1 × 15 | No other package |
| metadata-Dong-mouse-forebrain | data.frame | 1 × 15 | No other package |
| metadata-Dong-mouse-intest | data.frame | 1 × 15 | No other package |
| metadata-Dong-mouse-liver | data.frame | 1 × 15 | No other package |
| metadata-Dong-mouse-skin | data.frame | 1 × 15 | No other package |
| metadata-Francesconi-ipsc | data.frame | 1 × 15 | No other package |
| metadata-HEK-cellline | data.frame | 1 × 15 | No other package |
| metadata-Lightexposure-endothelial | data.frame | 1 × 15 | No other package |
| metadata-Lightexposure-microglia | data.frame | 1 × 15 | No other package |
| metadata-Mouse-bonemarrow | data.frame | 1 × 15 | No other package |
| metadata-Mouse-brain | data.frame | 1 × 15 | No other package |
| metadata-Mouse-retina | data.frame | 1 × 15 | No other package |
| metadata-Neural-10x | data.frame | 1 × 15 | No other package |
| metadata-Neural-DroNcseq | data.frame | 1 × 15 | No other package |
| metadata-Neural-Smartseq2 | data.frame | 1 × 15 | No other package |
| metadata-Neural-sciRNAseq | data.frame | 1 × 15 | No other package |
| metadata-PBMC-10x | data.frame | 1 × 15 | No other package |
| metadata-PBMC-CELSeq2 | data.frame | 1 × 15 | No other package |
| metadata-PBMC-Dropseq | data.frame | 1 × 15 | No other package |
| metadata-PBMC-inDrops | data.frame | 1 × 15 | No other package |
| metadata-PBMC-seqwell | data.frame | 1 × 15 | No other package |
| metadata-PBMC-smartseq2 | data.frame | 1 × 15 | No other package |
| metadata-RH41-cellline | data.frame | 1 × 15 | No other package |
| metadata-Soumillon-adipose | data.frame | 1 × 15 | No other package |
| metadata-Stemcell-timecourse | data.frame | 1 × 15 | No other package |
| metadata-TabulaMuris-dropseq | data.frame | 1 × 15 | No other package |
| metadata-Tung-ipsc | data.frame | 1 × 15 | No other package |
| metadata-Yang-mouse-liver | data.frame | 1 × 15 | No other package |
Topics
People
- Yue Cao author maintainer
- Jean Yee Hwa Yang author
- Pengyi Yang author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("SimBenchData")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.